Os05g0468000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os05g0468000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.29 | 0.271 | 3.01 | 0.0418 | 0.142 | -0.137 | -0.0667 | -0.112 | 0.0191 | 6.15 | 83.01 | 130 | -- | -- |
| 33.32 | 0.269 | 3.01 | 0.0389 | 0.147 | -0.143 | -0.113 | -- | 0.018 | 6.14 | 83 | 164 | -- | -- |
| 33.3 | 0.269 | 3.01 | 0.0415 | 0.145 | -0.141 | -- | -0.124 | 0.0193 | 6.21 | 83.01 | 153 | -- | -- |
| 33.35 | 0.269 | 3.01 | 0.0368 | 0.147 | -0.144 | -- | -- | 0.0188 | 6.26 | 83 | 164 | -- | -- |
| 34.02 | 0.272 | 3.01 | 0.0455 | -- | -0.0584 | -- | -0.143 | 0.0349 | -- | 83.01 | 92 | -- | -- |
| 33.91 | 0.273 | 3 | 0.0205 | 0.0854 | -- | 0.0195 | -- | 0.0406 | 8.93 | -- | -- | -- | -- |
| 33.91 | 0.273 | 3 | 0.0211 | 0.0856 | -- | -- | -- | 0.0405 | 8.83 | -- | -- | -- | -- |
| 34.09 | 0.272 | 3.01 | 0.0301 | -- | -0.0663 | -- | -- | 0.0307 | -- | 83.33 | 89 | -- | -- |
| 33.38 | 0.269 | 3.01 | -- | 0.147 | -0.142 | -- | -- | 0.0152 | 6.32 | 83 | 164 | -- | -- |
| 34.33 | 0.274 | 3.01 | 0.0211 | -- | -- | -- | -- | 0.0412 | -- | -- | -- | -- | -- |
| 33.92 | 0.272 | 3 | -- | 0.0857 | -- | -- | -- | 0.0382 | 8.81 | -- | -- | -- | -- |
| 34.11 | 0.272 | 3.01 | -- | -- | -0.0675 | -- | -- | 0.0265 | -- | 84 | 58 | -- | -- |
| 34.34 | 0.274 | 3.01 | -- | -- | -- | -- | -- | 0.0388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.18 | wind | 9.0 | 270 | > th | dose independent | rect. | 21 | 1 |
| 7 | 28.18 | wind | 5.0 | 10 | > th | dose independent | rect. | 24 | 2 |
| 27 | 28.18 | wind | 9.0 | 30 | > th | dose independent | rect. | 1 | 10 |
| 33 | 28.18 | wind | 9.0 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 39 | 28.18 | wind | 5.0 | 10 | > th | dose dependent | rect. | 24 | 2 |
| 64 | 28.18 | wind | 9.0 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 177 | 28.20 | wind | 3.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 184 | 28.41 | wind | 1.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 185 | 28.41 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 189 | 28.41 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 192 | 28.41 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 193 | 28.41 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 196 | 28.41 | wind | 1.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 197 | 28.41 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 233 | 28.59 | humidity | 70.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 397 | 28.61 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 422 | 28.64 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 423 | 28.65 | radiation | 40.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 425 | 28.68 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 429 | 28.71 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 432 | 28.73 | radiation | 20.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 434 | 28.74 | temperature | 25.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 436 | 28.74 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 439 | 28.77 | temperature | 30.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 444 | 28.81 | wind | 7.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 447 | 28.82 | wind | 5.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 452 | 28.83 | temperature | 10.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 454 | 28.83 | humidity | 50.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 456 | 28.83 | humidity | 90.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 460 | 28.83 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 10 | 1 |
| 461 | 28.83 | temperature | 10.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 462 | 28.83 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 463 | 28.85 | wind | 1.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 473 | 28.97 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 475 | 28.98 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 483 | 29.17 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 484 | 29.23 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 487 | 29.30 | wind | 1.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 544 | 30.00 | wind | 9.0 | 30 | < th | dose independent | rect. | 11 | 23 |
| 674 | 31.06 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 11 | 23 |
| 675 | 31.06 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 687 | 31.15 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 984 | 32.22 | temperature | 30.0 | 30 | < th | dose independent | rect. | 11 | 23 |