Os05g0467800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0467800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.95	(0.0446)	R²	:	0.144
β₁	:	-0.171	(0.163)	R²_dD	:	0.00222	R²_D	:	0.00102
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	14.1	(1.76)	R²_dE	:	0.649	R²_E	:	-0.266
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	25.6	(3.9)	R²_dD*E	:	0.413	R²_D*E	:	-0.516
γ₁	:	-0.0596	(0.0949)	R²_dN8	:	0.000976	R²_N8	:	0.000373
σ	:	0.83
deviance	:	317.68
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	19.86
memory length	:	236
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	6.55
open length of G	:	0.733

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
318.96	0.839	2.94	-0.171	0.154	10.1	-0.219	16.8	-0.0498	14.2	20.38	234	6.33	1.83
348.09	0.869	2.89	-0.0573	0.144	4.91	-0.201	--	0.01	14.8	20.45	220	7.38	1.03
316.37	0.828	2.95	-0.175	0.112	13.5	--	24	-0.0681	13.4	19.9	229	6.57	0.727
345.66	0.866	2.91	-0.0908	0.216	4.55	--	--	-0.0282	13.9	20.82	218	7.4	1.05
317.68	0.83	2.95	-0.171	--	14.1	--	25.6	-0.0596	--	19.86	236	6.55	0.733
365.66	0.896	2.93	-0.228	0.242	--	0.0997	--	-0.0969	11.5	--	--	--	--
365.7	0.896	2.93	-0.223	0.241	--	--	--	-0.0963	11.6	--	--	--	--
346.53	0.867	2.92	-0.1	--	4.11	--	--	-0.034	--	20.89	217	7.42	1.08
345.24	0.865	2.91	--	0.189	4.14	--	--	-0.0318	12.2	20.8	217	7.4	1.07
369.36	0.898	2.94	-0.23	--	--	--	--	-0.0991	--	--	--	--	--
367.01	0.896	2.92	--	0.244	--	--	--	-0.0714	11.7	--	--	--	--
346.72	0.867	2.92	--	--	4.2	--	--	-0.034	--	20.89	217	7.42	1.08
370.75	0.899	2.93	--	--	--	--	--	-0.0736	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	326.58	temperature	20	90	< th	dose independent	rect.	8	1
3	328.73	temperature	20	270	< th	dose dependent	rect.	6	2
5	333.54	temperature	20	270	< th	dose independent	rect.	6	2
7	334.45	temperature	20	270	< th	dose dependent	rect.	6	12
11	335.09	temperature	20	90	< th	dose dependent	rect.	8	1
13	335.60	temperature	20	270	< th	dose independent	rect.	6	12
23	337.03	humidity	80	270	< th	dose dependent	rect.	6	1
26	338.04	temperature	20	270	< th	dose independent	rect.	6	4
30	338.49	humidity	80	270	< th	dose independent	rect.	6	1
47	341.85	humidity	80	4320	< th	dose independent	rect.	4	3
53	342.41	humidity	80	4320	> th	dose independent	rect.	4	3
85	343.67	humidity	80	4320	< th	dose independent	rect.	23	8
86	343.69	humidity	80	4320	> th	dose independent	rect.	23	8
133	345.12	temperature	20	10	< th	dose independent	rect.	8	2
139	345.12	temperature	20	10	< th	dose dependent	rect.	8	2
175	345.96	temperature	20	10	< th	dose independent	rect.	7	12
206	346.46	humidity	80	4320	< th	dose dependent	rect.	22	9
229	346.92	temperature	20	10	< th	dose dependent	rect.	7	12
307	347.97	humidity	80	4320	< th	dose dependent	rect.	23	2
323	348.21	temperature	20	270	< th	dose independent	sin	0	NA
377	348.76	atmosphere	1010	30	> th	dose dependent	rect.	9	1
422	348.88	temperature	20	720	< th	dose independent	rect.	22	1
426	348.90	temperature	20	270	> th	dose independent	sin	0	NA
459	349.23	humidity	90	90	> th	dose dependent	rect.	13	4
481	349.46	humidity	90	90	> th	dose independent	rect.	15	2
496	349.62	temperature	20	270	< th	dose dependent	sin	23	NA
499	349.64	humidity	90	90	> th	dose independent	rect.	13	5
582	350.42	humidity	70	4320	> th	dose dependent	rect.	4	2
733	351.43	temperature	20	270	> th	dose independent	rect.	5	12
805	352.13	atmosphere	1010	270	> th	dose independent	rect.	5	1
847	352.32	wind	5	10	> th	dose independent	rect.	8	1
851	352.32	wind	5	10	> th	dose dependent	rect.	8	1
906	352.68	humidity	80	720	> th	dose independent	sin	8	NA
907	352.68	radiation	10	1440	< th	dose dependent	rect.	21	1
924	352.81	humidity	80	720	< th	dose independent	sin	10	NA
948	352.93	radiation	40	43200	< th	dose dependent	rect.	21	1
971	353.09	temperature	10	1440	> th	dose independent	rect.	21	1
974	353.09	temperature	30	1440	< th	dose independent	rect.	21	1
978	353.09	humidity	50	1440	> th	dose independent	rect.	21	1
984	353.09	atmosphere	995	1440	> th	dose independent	rect.	21	1
985	353.09	radiation	1	1440	< th	dose independent	rect.	21	1