Os05g0467600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0467600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207.74 | 0.677 | 6.05 | 4.15 | 0.508 | 1.19 | -1.16 | 3.53 | 2.35 | 18.3 | 43.94 | 4346 | -- | -- |
| 220.84 | 0.692 | 6.04 | 4.2 | 0.376 | 1.12 | -0.906 | -- | 2.3 | 18 | 40.04 | 5341 | -- | -- |
| 208.86 | 0.673 | 6.04 | 4.14 | 0.504 | 1.42 | -- | 4.34 | 2.39 | 19.1 | 49.04 | 4386 | -- | -- |
| 222.78 | 0.695 | 6 | 3.95 | 0.448 | 0.95 | -- | -- | 2.4 | 19.4 | 45.81 | 3522 | -- | -- |
| 218.32 | 0.688 | 6.04 | 4.22 | -- | 1.77 | -- | 4.13 | 2.37 | -- | 49.23 | 5233 | -- | -- |
| 237.04 | 0.722 | 6.02 | 3.86 | 0.486 | -- | -1.15 | -- | 2.38 | 18.5 | -- | -- | -- | -- |
| 239.66 | 0.725 | 6.02 | 3.87 | 0.49 | -- | -- | -- | 2.37 | 19.3 | -- | -- | -- | -- |
| 230.6 | 0.707 | 6.03 | 4.04 | -- | 1.14 | -- | -- | 2.27 | -- | 40 | 5270 | -- | -- |
| 613.97 | 1.15 | 6.16 | -- | 0.423 | 1 | -- | -- | 1.83 | 20 | 40.11 | 2536 | -- | -- |
| 252.42 | 0.742 | 6.01 | 3.86 | -- | -- | -- | -- | 2.36 | -- | -- | -- | -- | -- |
| 634.83 | 1.18 | 6.12 | -- | 0.458 | -- | -- | -- | 1.94 | 19.9 | -- | -- | -- | -- |
| 617.28 | 1.16 | 6.14 | -- | -- | 1.22 | -- | -- | 1.79 | -- | 40 | 2437 | -- | -- |
| 646.22 | 1.19 | 6.1 | -- | -- | -- | -- | -- | 1.93 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.89 | temperature | 25 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 5 | 184.08 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 16 | 184.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 18 | 184.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 19 | 184.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 61 | 185.53 | temperature | 25 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 99 | 186.04 | temperature | 25 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 107 | 186.17 | temperature | 25 | 43200 | > th | dose dependent | sin | 11 | NA |
| 116 | 186.28 | temperature | 25 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 125 | 186.38 | temperature | 10 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 152 | 186.59 | temperature | 10 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 158 | 186.63 | temperature | 30 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 165 | 186.68 | temperature | 30 | 43200 | < th | dose independent | rect. | 16 | 18 |
| 169 | 186.69 | temperature | 30 | 43200 | > th | dose independent | sin | 7 | NA |
| 170 | 186.69 | temperature | 30 | 43200 | < th | dose independent | sin | 7 | NA |
| 178 | 186.73 | temperature | 30 | 43200 | < th | dose independent | sin | 10 | NA |
| 183 | 186.75 | temperature | 30 | 43200 | > th | dose independent | sin | 10 | NA |
| 187 | 186.75 | temperature | 30 | 43200 | > th | dose independent | rect. | 16 | 18 |
| 188 | 186.75 | temperature | 30 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 200 | 186.79 | temperature | 25 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 206 | 186.81 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 233 | 186.86 | temperature | 30 | 43200 | > th | dose dependent | rect. | 18 | 21 |
| 293 | 186.97 | temperature | 30 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 297 | 186.97 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 299 | 186.98 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 308 | 186.98 | temperature | 30 | 43200 | > th | dose independent | rect. | 18 | 19 |
| 329 | 187.02 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 578 | 187.30 | temperature | 30 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 650 | 187.36 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 869 | 187.46 | temperature | 30 | 43200 | < th | dose independent | rect. | 5 | 14 |
| 907 | 187.47 | temperature | 30 | 43200 | > th | dose independent | no | NA | NA |
| 909 | 187.47 | temperature | 30 | 43200 | < th | dose independent | no | NA | NA |
| 912 | 187.47 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 913 | 187.47 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 11 |