Os05g0467000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-dependent protein kinase.
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Os05g0467000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-dependent protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.2 | 0.394 | 8.5 | 1.04 | 0.762 | -0.817 | 0.104 | -3.37 | 0.433 | 3.61 | 9.777 | 15 | -- | -- |
| 75.03 | 0.403 | 8.45 | 1.46 | 0.743 | -0.666 | 0.956 | -- | 0.522 | 3.26 | 24.1 | 4 | -- | -- |
| 70.21 | 0.393 | 8.5 | 1.02 | 0.768 | -0.809 | -- | -3.49 | 0.427 | 3.66 | 9.777 | 15 | -- | -- |
| 77.4 | 0.41 | 8.45 | 1.44 | 0.691 | -0.819 | -- | -- | 0.541 | 3.54 | 24.1 | 18 | -- | -- |
| 92.59 | 0.448 | 8.48 | 1.2 | -- | -1.54 | -- | -3.36 | 0.558 | -- | 15.9 | 25 | -- | -- |
| 82.91 | 0.427 | 8.47 | 1.36 | 1.01 | -- | 1.23 | -- | 0.444 | 3.14 | -- | -- | -- | -- |
| 87.65 | 0.438 | 8.47 | 1.33 | 1.02 | -- | -- | -- | 0.437 | 3.37 | -- | -- | -- | -- |
| 94.36 | 0.452 | 8.43 | 1.58 | -- | -1.44 | -- | -- | 0.639 | -- | 24.13 | 18 | -- | -- |
| 131.35 | 0.534 | 8.5 | -- | 0.888 | -0.416 | -- | -- | 0.326 | 3.47 | 24.9 | 12 | -- | -- |
| 146.4 | 0.565 | 8.47 | 1.37 | -- | -- | -- | -- | 0.464 | -- | -- | -- | -- | -- |
| 134.26 | 0.542 | 8.5 | -- | 1.05 | -- | -- | -- | 0.288 | 3.37 | -- | -- | -- | -- |
| 159.41 | 0.588 | 8.48 | -- | -- | -1.21 | -- | -- | 0.421 | -- | 24.22 | 21 | -- | -- |
| 196.14 | 0.654 | 8.5 | -- | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.64 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 4 | 62.01 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 8 | 62.09 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 11 | 62.19 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 18 | 62.36 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 67 | 62.49 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 73 | 62.59 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 77 | 62.65 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 191 | 63.53 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 192 | 63.54 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 194 | 63.64 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 204 | 63.85 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 252 | 64.56 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 256 | 64.64 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 260 | 64.67 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 263 | 64.67 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 282 | 64.75 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 283 | 64.76 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 284 | 64.77 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 286 | 64.78 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 287 | 64.79 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 18 |
| 330 | 64.89 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 352 | 64.93 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 17 |
| 380 | 64.97 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 382 | 64.98 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 386 | 64.98 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 20 | 18 |
| 398 | 65.00 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 405 | 65.00 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 22 |
| 421 | 65.02 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 439 | 65.04 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 553 | 65.25 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 560 | 65.27 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 567 | 65.29 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 585 | 65.33 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 595 | 65.34 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 20 |
| 653 | 65.43 | atmosphere | 1005.0 | 14400 | > th | dose independent | no | NA | NA |
| 659 | 65.43 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 665 | 65.45 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 666 | 65.45 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 675 | 65.45 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 708 | 65.48 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 23 |