Os05g0466900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0466900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.77 | 0.721 | 6.59 | -2.1 | 2.16 | 1.79 | -1.03 | -1.42 | -0.11 | 9.52 | 25.5 | 821 | 20.1 | 0.323 |
| 235.12 | 0.714 | 6.58 | -1.91 | 2.15 | 1.68 | -1 | -- | -0.0942 | 9.47 | 25.5 | 820 | 20.3 | 0.0833 |
| 238.43 | 0.719 | 6.59 | -2.14 | 2.17 | 1.82 | -- | -1.52 | -0.113 | 9.52 | 25.57 | 817 | 20.3 | 0.178 |
| 238.68 | 0.72 | 6.58 | -1.93 | 2.16 | 1.66 | -- | -- | -0.0543 | 9.47 | 25.54 | 820 | 20.3 | 0.0503 |
| 482.03 | 1.02 | 6.71 | -2.37 | -- | 1.88 | -- | -1.21 | -0.43 | -- | 23.13 | 1017 | 20.6 | 2.16 |
| 313.69 | 0.83 | 6.53 | -1.66 | 2.42 | -- | -0.593 | -- | 0.0366 | 8.28 | -- | -- | -- | -- |
| 314.77 | 0.831 | 6.53 | -1.68 | 2.42 | -- | -- | -- | 0.0364 | 8.26 | -- | -- | -- | -- |
| 478.12 | 1.02 | 6.69 | -2.11 | -- | 1.96 | -- | -- | -0.361 | -- | 22.82 | 990 | 21.4 | 2.02 |
| 334.85 | 0.852 | 6.53 | -- | 2.21 | 1.35 | -- | -- | 0.0984 | 9.3 | 25.16 | 815 | 20.3 | 0.164 |
| 638.94 | 1.18 | 6.6 | -1.66 | -- | -- | -- | -- | 0.0635 | -- | -- | -- | -- | -- |
| 389.21 | 0.923 | 6.49 | -- | 2.41 | -- | -- | -- | 0.224 | 8.31 | -- | -- | -- | -- |
| 406.81 | 0.939 | 6.62 | -- | -- | 2.71 | -- | -- | -0.0179 | -- | 9.907 | 421 | 23.5 | 10.8 |
| 711.95 | 1.25 | 6.55 | -- | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 246.13 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 246.20 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 5 | 248.40 | humidity | 70 | 1440 | < th | dose independent | sin | 13 | NA |
| 7 | 248.62 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 9 | 249.15 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 20 | 249.21 | humidity | 70 | 1440 | > th | dose independent | sin | 12 | NA |
| 23 | 249.42 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 25 | 249.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 28 | 250.24 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 29 | 250.26 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 11 |
| 30 | 250.28 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 50 | 250.49 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 62 | 250.55 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 87 | 251.63 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 88 | 251.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 89 | 251.67 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 94 | 251.81 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 99 | 251.92 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 13 |
| 101 | 251.93 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 138 | 252.86 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 154 | 253.18 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 194 | 254.51 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 199 | 254.71 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 205 | 254.84 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 220 | 254.91 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 222 | 254.94 | humidity | 80 | 1440 | < th | dose dependent | sin | 15 | NA |
| 238 | 255.07 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 261 | 255.23 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 476 | 256.90 | radiation | 10 | 1440 | > th | dose independent | sin | 14 | NA |
| 480 | 256.93 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 16 |
| 483 | 256.98 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 496 | 257.17 | radiation | 10 | 1440 | < th | dose dependent | sin | 15 | NA |
| 626 | 258.04 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 711 | 258.52 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 778 | 258.89 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 822 | 259.02 | humidity | 50 | 1440 | > th | dose dependent | sin | 23 | NA |
| 940 | 259.50 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |