Os05g0466000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os05g0466000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.21 | 0.506 | 4.41 | -1.79 | 0.699 | 0.697 | -0.66 | -1.27 | 0.102 | 3.12 | 20 | 1441 | -- | -- |
| 119.23 | 0.509 | 4.41 | -1.83 | 0.727 | 0.653 | -0.611 | -- | 0.0745 | 2.96 | 19.55 | 1381 | -- | -- |
| 117.64 | 0.505 | 4.41 | -1.79 | 0.699 | 0.7 | -- | -1.22 | 0.101 | 3.04 | 20 | 1440 | -- | -- |
| 120.27 | 0.511 | 4.41 | -1.86 | 0.738 | 0.71 | -- | -- | 0.0819 | 2.81 | 19.52 | 1379 | -- | -- |
| 135.57 | 0.542 | 4.43 | -1.84 | -- | 0.874 | -- | -1.18 | 0.0281 | -- | 19.62 | 472 | -- | -- |
| 137.18 | 0.549 | 4.45 | -1.94 | 0.672 | -- | -0.757 | -- | -0.0828 | 3.2 | -- | -- | -- | -- |
| 139.03 | 0.552 | 4.45 | -1.92 | 0.668 | -- | -- | -- | -0.0782 | 3.13 | -- | -- | -- | -- |
| 135.76 | 0.543 | 4.38 | -2.04 | -- | 1.01 | -- | -- | 0.136 | -- | 19.51 | 1890 | -- | -- |
| 197.02 | 0.654 | 4.37 | -- | 0.685 | 0.827 | -- | -- | 0.351 | 2.59 | 20.01 | 1413 | -- | -- |
| 164.43 | 0.599 | 4.45 | -1.89 | -- | -- | -- | -- | -0.0608 | -- | -- | -- | -- | -- |
| 236.18 | 0.719 | 4.4 | -- | 0.63 | -- | -- | -- | 0.136 | 3.12 | -- | -- | -- | -- |
| 203.86 | 0.665 | 4.33 | -- | -- | 1.56 | -- | -- | 0.46 | -- | 10.18 | 1769 | -- | -- |
| 258.8 | 0.751 | 4.4 | -- | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.94 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 4 | 110.49 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 9 | 110.82 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 16 | 110.88 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 23 | 110.94 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 27 | 110.97 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 33 | 111.03 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 39 | 111.07 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 44 | 111.09 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 49 | 111.10 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 60 | 111.15 | temperature | 20.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 67 | 111.17 | temperature | 20.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 69 | 111.17 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 23 | 12 |
| 89 | 111.22 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 109 | 111.26 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 4 |
| 125 | 111.31 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 23 | 12 |
| 137 | 111.32 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 6 |
| 153 | 111.35 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 190 | 111.43 | wind | 9.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 257 | 111.54 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 23 | 22 |
| 304 | 111.61 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 23 | 22 |
| 308 | 111.63 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 319 | 111.65 | temperature | 20.0 | 14400 | < th | dose independent | no | NA | NA |
| 340 | 111.68 | wind | 9.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 349 | 111.69 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 378 | 111.75 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 380 | 111.76 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 383 | 111.77 | temperature | 20.0 | 14400 | > th | dose independent | no | NA | NA |
| 461 | 111.91 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 463 | 111.91 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 496 | 111.98 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 497 | 111.98 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 509 | 111.99 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 580 | 112.16 | humidity | 90.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 600 | 112.20 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 602 | 112.21 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 3 | 18 |
| 610 | 112.23 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 15 | 15 |
| 633 | 112.28 | wind | 7.0 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 639 | 112.28 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 9 | 4 |
| 642 | 112.29 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 658 | 112.31 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 668 | 112.32 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 670 | 112.33 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 677 | 112.34 | wind | 7.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 695 | 112.37 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 702 | 112.38 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 705 | 112.39 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 719 | 112.42 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 752 | 112.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 753 | 112.50 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 759 | 112.50 | wind | 3.0 | 43200 | > th | dose dependent | sin | 7 | NA |
| 771 | 112.53 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 843 | 112.69 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 850 | 112.69 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 853 | 112.70 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 872 | 112.74 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 13 |
| 893 | 112.76 | wind | 7.0 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 917 | 112.80 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 925 | 112.81 | wind | 7.0 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 929 | 112.81 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 4 | 11 |
| 938 | 112.83 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 966 | 112.88 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 969 | 112.89 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 990 | 112.90 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 993 | 112.90 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 4 | 7 |