Os05g0461600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SIK1 protein (Nucleolar protein NOP56).
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Os05g0461600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SIK1 protein (Nucleolar protein NOP56).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.87 | 0.579 | 10.5 | 1.35 | 1.2 | -1.75 | 0.272 | 1.57 | 0.388 | 7.05 | 20.2 | 1606 | 0.24 | 3.64 |
| 157.42 | 0.584 | 10.5 | 1.12 | 1.26 | -1.72 | 0.52 | -- | 0.337 | 7 | 20.09 | 1609 | 0.183 | 3.74 |
| 151.21 | 0.573 | 10.5 | 1.39 | 1.24 | -1.79 | -- | 1.75 | 0.385 | 6.98 | 20.1 | 1633 | 0.0156 | 3.78 |
| 156.81 | 0.583 | 10.5 | 1.08 | 1.24 | -1.77 | -- | -- | 0.298 | 6.99 | 20.2 | 1615 | 0.0166 | 3.78 |
| 219.24 | 0.69 | 10.5 | 1.5 | -- | -1.4 | -- | 1.88 | 0.426 | -- | 20.01 | 1540 | 0.0167 | 3.6 |
| 242.55 | 0.73 | 10.6 | 0.409 | 0.971 | -- | 0.387 | -- | -0.0922 | 8.17 | -- | -- | -- | -- |
| 243 | 0.73 | 10.6 | 0.421 | 0.97 | -- | -- | -- | -0.0921 | 8.22 | -- | -- | -- | -- |
| 219.17 | 0.69 | 10.6 | 0.973 | -- | -1.33 | -- | -- | 0.317 | -- | 20.21 | 1504 | 0.0167 | 3.73 |
| 181.23 | 0.627 | 10.5 | -- | 1.15 | -1.56 | -- | -- | 0.217 | 7.11 | 20.22 | 1618 | 0.00774 | 3.75 |
| 294.92 | 0.802 | 10.7 | 0.428 | -- | -- | -- | -- | -0.081 | -- | -- | -- | -- | -- |
| 247.67 | 0.736 | 10.6 | -- | 0.972 | -- | -- | -- | -0.139 | 8.19 | -- | -- | -- | -- |
| 241.79 | 0.724 | 10.6 | -- | -- | -1.14 | -- | -- | 0.183 | -- | 20.28 | 1521 | 0.3 | 3.42 |
| 299.75 | 0.808 | 10.7 | -- | -- | -- | -- | -- | -0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 2 |
| 2 | 165.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 95 | 174.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 10 |
| 120 | 175.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 136 | 175.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 138 | 176.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 148 | 176.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 177 | 176.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 195 | 176.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 225 | 177.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 251 | 177.41 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 258 | 177.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 312 | 177.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 329 | 177.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 391 | 178.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 408 | 178.37 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 422 | 178.43 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 439 | 178.55 | temperature | 30 | 1440 | < th | dose dependent | sin | 8 | NA |
| 768 | 180.50 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 896 | 181.22 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |