Os05g0460200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquitin carrier protein.
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Os05g0460200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin carrier protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.16 | 0.226 | 12.3 | 0.639 | 0.515 | -0.889 | -0.0849 | 0.194 | 0.441 | 3.72 | 23.09 | 2144 | -- | -- |
| 23.16 | 0.224 | 12.2 | 0.662 | 0.525 | -0.954 | -0.0799 | -- | 0.448 | 3.68 | 22.83 | 2103 | -- | -- |
| 23.16 | 0.224 | 12.3 | 0.641 | 0.519 | -0.91 | -- | 0.186 | 0.445 | 3.7 | 22.88 | 2115 | -- | -- |
| 23.19 | 0.224 | 12.2 | 0.67 | 0.52 | -0.951 | -- | -- | 0.452 | 3.71 | 22.8 | 2109 | -- | -- |
| 36.31 | 0.281 | 12.3 | 0.523 | -- | -0.845 | -- | 0.605 | 0.387 | -- | 25.17 | 2557 | -- | -- |
| 35.64 | 0.28 | 12.2 | 1.01 | 0.536 | -- | -0.143 | -- | 0.638 | 3.41 | -- | -- | -- | -- |
| 35.7 | 0.28 | 12.2 | 1.02 | 0.535 | -- | -- | -- | 0.639 | 3.41 | -- | -- | -- | -- |
| 36.27 | 0.28 | 12.3 | 0.613 | -- | -1 | -- | -- | 0.433 | -- | 22.8 | 2563 | -- | -- |
| 26.8 | 0.241 | 12.3 | -- | 0.55 | -1.09 | -- | -- | 0.36 | 3.79 | 19 | 46897 | -- | -- |
| 51.8 | 0.336 | 12.2 | 1.04 | -- | -- | -- | -- | 0.653 | -- | -- | -- | -- | -- |
| 62.93 | 0.371 | 12.2 | -- | 0.555 | -- | -- | -- | 0.525 | 3.41 | -- | -- | -- | -- |
| 41.3 | 0.299 | 12.3 | -- | -- | -1.13 | -- | -- | 0.344 | -- | 19.16 | 28426 | -- | -- |
| 80.27 | 0.418 | 12.2 | -- | -- | -- | -- | -- | 0.538 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 16 | 23.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 26 | 23.57 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 28 | 23.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 60 | 23.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 200 | 23.91 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 206 | 23.92 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 219 | 23.94 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 224 | 23.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 360 | 24.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 364 | 24.13 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 375 | 24.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 410 | 24.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 443 | 24.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 449 | 24.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 7 |
| 465 | 24.27 | temperature | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 477 | 24.28 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 479 | 24.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 489 | 24.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 508 | 24.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 606 | 24.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 13 |
| 607 | 24.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 13 |
| 621 | 24.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 631 | 24.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 674 | 24.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 675 | 24.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 764 | 24.51 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 847 | 24.55 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |