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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0459600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF246, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.95 (0.0477) R2 : 0.546
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.32 (0.143) R2dE : 0.538 R2E : 0.533
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.273 (0.101) R2dN8 : 0.0122 R2N8 : 0.00739
σ : 0.897
deviance : 371.05
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.2
memory length : 461
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 23.6
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
357.02 0.888 3.92 0.381 1.72 2.11 -1.54 2.04 -0.296 7.06 0.05005 261 20.3 --
361.9 0.886 3.91 0.387 1.7 2.11 -0.71 -- -0.275 7.07 0.01996 261 20.5 --
361.51 0.886 3.92 0.339 1.7 2.07 -- 0.969 -0.294 7.14 0.0102 261 20.5 --
362.85 0.887 3.91 0.292 1.67 2.04 -- -- -0.299 7.13 0.01354 264 20.7 --
368.22 0.894 3.93 0.28 -- 3.31 -- 0.173 -0.269 -- 0.2 456 23.4 --
417.04 0.957 3.9 0.154 2.75 -- -0.474 -- -0.31 6.32 -- -- -- --
417.6 0.957 3.89 0.148 2.75 -- -- -- -0.308 6.32 -- -- -- --
368.37 0.894 3.94 0.326 -- 3.33 -- -- -0.267 -- 0.19 458 23.4 --
365.64 0.891 3.91 -- 1.67 2.01 -- -- -0.295 7.13 0.01698 264 20.8 --
809.26 1.33 3.95 0.221 -- -- -- -- -0.249 -- -- -- -- --
418.18 0.957 3.9 -- 2.75 -- -- -- -0.325 6.31 -- -- -- --
371.05 0.897 3.95 -- -- 3.32 -- -- -0.273 -- 0.2 461 23.6 --
810.55 1.33 3.95 -- -- -- -- -- -0.274 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 346.91 wind 5.0 270 < th dose independent rect. 24 7
3 347.36 humidity 50.0 10 > th dose dependent rect. 3 8
4 347.95 wind 5.0 90 < th dose dependent rect. 2 9
6 348.09 radiation 40.0 30 < th dose dependent rect. 3 8
7 348.32 wind 9.0 270 < th dose dependent rect. 24 7
12 349.04 radiation 40.0 30 < th dose independent rect. 3 8
13 349.07 atmosphere 1010.0 30 < th dose independent rect. 3 5
14 349.11 wind 7.0 10 < th dose dependent rect. 3 5
19 349.62 precipitation 0.1 270 < th dose independent rect. 19 6
20 349.62 precipitation 0.1 270 < th dose dependent rect. 19 6
23 349.76 wind 1.0 270 > th dose independent rect. 5 9
25 349.84 precipitation 0.1 270 < th dose independent rect. 1 18
26 349.84 precipitation 0.1 270 < th dose dependent rect. 1 18
27 349.89 precipitation 0.1 270 < th dose independent rect. 24 8
29 349.89 precipitation 0.1 270 < th dose dependent rect. 24 8
30 349.90 radiation 40.0 270 < th dose dependent rect. 24 8
33 350.02 wind 9.0 270 < th dose independent rect. 1 18
53 350.71 precipitation 0.1 10 < th dose independent rect. 8 19
54 350.71 precipitation 0.1 10 < th dose dependent rect. 8 19
56 350.80 temperature 15.0 270 > th dose independent rect. 19 6
61 350.88 wind 3.0 10 < th dose independent rect. 3 5
62 350.98 radiation 20.0 270 < th dose independent rect. 24 8
67 351.10 temperature 10.0 270 > th dose independent rect. 24 8
68 351.10 temperature 30.0 270 < th dose independent rect. 24 8
69 351.10 humidity 50.0 270 > th dose independent rect. 24 8
71 351.10 atmosphere 995.0 270 > th dose independent rect. 24 8
72 351.10 atmosphere 1015.0 270 < th dose independent rect. 24 8
73 351.10 temperature 10.0 270 > th dose independent rect. 8 16
75 351.11 radiation 1.0 270 < th dose dependent rect. 19 6
77 351.12 temperature 30.0 270 < th dose independent rect. 19 6
78 351.12 humidity 50.0 270 > th dose independent rect. 19 6
79 351.12 atmosphere 995.0 270 > th dose independent rect. 19 6
80 351.12 radiation 1.0 270 < th dose independent rect. 19 6
85 351.12 temperature 10.0 270 > th dose independent rect. 1 18
86 351.12 atmosphere 1015.0 270 < th dose independent rect. 1 18
93 351.17 precipitation 0.1 270 < th dose independent rect. 8 16
94 351.17 precipitation 0.1 270 < th dose dependent rect. 8 16
97 351.33 wind 3.0 30 < th dose independent rect. 3 8
99 351.36 wind 9.0 270 < th dose independent rect. 19 6
114 351.59 radiation 40.0 270 < th dose independent rect. 24 7
123 351.94 wind 1.0 270 > th dose independent rect. 8 16
134 352.10 precipitation 0.1 10 < th dose independent rect. 21 6
135 352.10 precipitation 0.1 10 < th dose dependent rect. 21 6
156 352.68 wind 3.0 270 < th dose independent rect. 3 1
180 353.26 precipitation 0.1 10 < th dose independent rect. 3 5
182 353.26 precipitation 0.1 10 < th dose dependent rect. 3 5
188 353.40 wind 7.0 270 < th dose dependent rect. 3 1
194 353.50 wind 9.0 270 < th dose independent rect. 8 16
199 353.65 atmosphere 1010.0 90 < th dose independent rect. 2 7
216 353.89 wind 9.0 270 < th dose independent rect. 14 15
217 353.89 temperature 15.0 10 > th dose independent rect. 8 19
220 353.97 temperature 10.0 270 > th dose dependent rect. 20 16
223 354.02 wind 7.0 270 < th dose dependent rect. 2 3
230 354.23 precipitation 0.1 10 < th dose independent rect. 3 18
233 354.23 precipitation 0.1 10 < th dose dependent rect. 3 18
236 354.27 atmosphere 995.0 270 > th dose independent rect. 7 17
237 354.28 wind 9.0 270 < th dose independent rect. 12 8
251 354.49 humidity 50.0 270 > th dose dependent rect. 19 6
255 354.58 wind 3.0 270 < th dose independent rect. 2 3
259 354.63 precipitation 0.1 270 < th dose independent rect. 20 16
261 354.63 precipitation 0.1 270 < th dose dependent rect. 20 16
267 354.70 temperature 15.0 90 > th dose independent rect. 21 6
268 354.71 temperature 10.0 270 > th dose independent rect. 5 9
269 354.71 atmosphere 995.0 270 > th dose independent rect. 5 9
270 354.71 atmosphere 1015.0 270 < th dose independent rect. 5 9
271 354.71 temperature 10.0 270 > th dose independent rect. 14 15
289 354.92 precipitation 0.1 270 < th dose independent rect. 12 8
290 354.92 precipitation 0.1 270 < th dose dependent rect. 12 8
291 354.95 wind 9.0 90 < th dose independent rect. 3 18
295 354.99 temperature 10.0 10 > th dose independent rect. 3 5
297 354.99 temperature 30.0 10 < th dose independent rect. 3 5
298 354.99 humidity 50.0 10 > th dose independent rect. 3 5
300 354.99 atmosphere 995.0 10 > th dose independent rect. 3 5
303 355.02 temperature 10.0 270 > th dose dependent rect. 19 6
315 355.10 temperature 10.0 270 > th dose independent rect. 12 8
316 355.10 atmosphere 1015.0 270 < th dose independent rect. 12 8
317 355.10 temperature 10.0 270 > th dose independent rect. 20 16
318 355.10 atmosphere 995.0 270 > th dose independent rect. 20 16
326 355.19 wind 1.0 270 > th dose independent rect. 3 1
327 355.20 precipitation 0.1 270 < th dose independent rect. 3 1
329 355.20 precipitation 0.1 270 < th dose dependent rect. 3 1
344 355.30 precipitation 0.1 270 < th dose independent rect. 5 9
345 355.30 precipitation 0.1 270 < th dose dependent rect. 5 9
347 355.31 wind 9.0 10 < th dose independent rect. 3 18
356 355.39 radiation 1.0 90 < th dose dependent rect. 21 6
358 355.40 temperature 30.0 90 < th dose independent rect. 21 6
359 355.40 humidity 50.0 90 > th dose independent rect. 21 6
362 355.40 atmosphere 995.0 90 > th dose independent rect. 21 6
363 355.40 radiation 1.0 90 < th dose independent rect. 21 6
368 355.40 temperature 10.0 90 > th dose independent rect. 3 18
369 355.40 atmosphere 1015.0 90 < th dose independent rect. 3 18
375 355.43 wind 9.0 30 < th dose dependent rect. 3 16
379 355.49 temperature 15.0 270 > th dose independent rect. 21 3
380 355.50 humidity 80.0 270 > th dose independent rect. 3 1
394 355.54 wind 9.0 90 < th dose independent rect. 21 6
399 355.62 temperature 15.0 10 > th dose independent rect. 21 6
410 355.71 humidity 50.0 270 > th dose independent rect. 20 16
450 355.84 wind 9.0 270 < th dose independent rect. 20 16
454 355.89 precipitation 0.1 270 < th dose independent rect. 21 3
455 355.89 precipitation 0.1 270 < th dose dependent rect. 21 3
456 355.89 radiation 1.0 270 < th dose dependent rect. 1 15
473 356.04 temperature 30.0 30 < th dose dependent rect. 3 8
494 356.09 wind 9.0 270 < th dose independent rect. 24 21
497 356.13 humidity 50.0 10 > th dose dependent rect. 3 5
498 356.15 radiation 40.0 10 < th dose independent rect. 3 5
519 356.20 wind 1.0 270 > th dose independent rect. 12 8
522 356.23 humidity 80.0 30 > th dose independent rect. 3 7
530 356.31 wind 9.0 270 < th dose independent rect. 5 9
532 356.32 humidity 50.0 90 > th dose dependent rect. 21 6
538 356.37 temperature 10.0 270 > th dose independent rect. 3 1
540 356.37 temperature 30.0 270 < th dose independent rect. 3 1
541 356.37 humidity 50.0 270 > th dose independent rect. 3 1
544 356.37 atmosphere 995.0 270 > th dose independent rect. 3 1
545 356.37 atmosphere 1010.0 270 < th dose independent rect. 3 1
547 356.37 radiation 1.0 270 < th dose independent rect. 3 1
553 356.37 temperature 10.0 270 > th dose independent rect. 4 23
554 356.37 radiation 1.0 270 < th dose dependent rect. 3 1
570 356.49 temperature 30.0 10 < th dose independent rect. 21 6
571 356.49 humidity 50.0 10 > th dose independent rect. 21 6
574 356.49 atmosphere 995.0 10 > th dose independent rect. 21 6
575 356.49 radiation 1.0 10 < th dose independent rect. 21 6
581 356.49 temperature 10.0 10 > th dose independent rect. 3 18
583 356.49 atmosphere 1015.0 10 < th dose independent rect. 3 18
584 356.49 radiation 1.0 10 < th dose dependent rect. 21 6
589 356.50 wind 9.0 10 < th dose independent rect. 21 6
590 356.52 wind 1.0 270 > th dose independent rect. 19 6
627 356.70 atmosphere 995.0 10 > th dose independent rect. 8 19
633 356.76 wind 9.0 10 < th dose independent rect. 8 19
647 356.94 humidity 50.0 270 > th dose independent rect. 1 18
662 356.99 radiation 1.0 270 > th dose independent rect. 6 8
674 357.09 radiation 1.0 270 < th dose dependent rect. 21 3
678 357.10 temperature 30.0 270 < th dose independent rect. 21 3
679 357.10 humidity 50.0 270 > th dose independent rect. 21 3
682 357.10 atmosphere 995.0 270 > th dose independent rect. 21 3
683 357.10 radiation 1.0 270 < th dose independent rect. 21 3
688 357.10 temperature 10.0 270 > th dose independent rect. 24 21
694 357.13 radiation 40.0 270 < th dose independent rect. 14 15
700 357.19 humidity 50.0 270 > th dose dependent rect. 24 8
714 357.35 wind 9.0 270 < th dose independent rect. 21 3
719 357.38 wind 9.0 30 < th dose dependent rect. 3 18
733 357.53 atmosphere 995.0 270 > th dose independent rect. 1 18
742 357.59 atmosphere 1015.0 270 < th dose independent rect. 24 21
753 357.64 temperature 10.0 270 > th dose dependent rect. 21 3
762 357.73 radiation 1.0 270 < th dose dependent rect. 1 18
763 357.74 temperature 30.0 270 < th dose dependent rect. 3 1
767 357.80 precipitation 0.1 270 < th dose independent rect. 2 3
770 357.80 precipitation 0.1 270 < th dose dependent rect. 2 3
776 357.85 radiation 1.0 270 < th dose independent rect. 1 15
777 357.85 humidity 50.0 270 > th dose dependent rect. 21 3
835 358.15 precipitation 0.1 270 < th dose independent rect. 14 15
837 358.15 precipitation 0.1 270 < th dose dependent rect. 14 15
868 358.25 humidity 50.0 270 > th dose dependent rect. 1 5
922 358.39 temperature 30.0 30 < th dose dependent rect. 3 5
943 358.51 wind 9.0 10 < th dose dependent rect. 21 6
990 358.74 temperature 30.0 270 < th dose dependent rect. 24 7