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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0459400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Kinesin, motor region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.52 (0.0411) R2 : 0.641
β1 : 0.676 (0.15) R2dD : 0.0163 R2D : 0.0103
β2 : 3.91 (0.164) R2dC : 1.16 R2C : 0.377
β3 : -1.58 (0.154) R2dE : 0.218 R2E : -0.577
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 2.32 (0.412) R2dD*E : 0.0271 R2D*E : 0.0108
γ1 : -0.168 (0.0886) R2dN8 : 0.00427 R2N8 : -0.00977
σ : 0.751
deviance : 260.31
__
_____
C
peak time of C : 19.9
E
wheather : radiation
threshold : 41.89
memory length : 245
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.02
open length of G : 17.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
258.1 0.755 4.52 0.747 3.9 -1.56 1.3 1.48 -0.157 19.9 41.92 242 8.03 17.4
261.53 0.753 4.51 0.874 3.88 -1.53 2.48 -- -0.136 19.8 41.92 235 8.04 17.4
260.31 0.751 4.52 0.676 3.91 -1.58 -- 2.32 -0.168 19.9 41.89 245 8.02 17.4
279.19 0.778 4.51 0.82 3.85 -1.53 -- -- -0.117 19.8 42.49 247 7.91 17.4
581.71 1.12 4.38 0.157 -- -2.63 -- 1.26 0.151 -- 42.25 1224 8.5 19.7
316.54 0.834 4.43 0.941 2.6 -- 2.53 -- 0.0753 20.2 -- -- -- --
335.92 0.858 4.43 0.869 2.6 -- -- -- 0.0774 20.1 -- -- -- --
325.8 0.841 4.33 0.994 -- 2.26 -- -- 0.0942 -- 75.92 799 4.21 18.1
296.51 0.802 4.54 -- 3.89 -1.54 -- -- -0.218 19.9 41.19 247 7.95 17.3
706.42 1.24 4.36 0.847 -- -- -- -- 0.0462 -- -- -- -- --
355.81 0.882 4.45 -- 2.59 -- -- -- -0.0194 20.1 -- -- -- --
331.5 0.848 4.4 -- -- 2.32 -- -- -0.11 -- 70 804 2.84 19.8
725.33 1.26 4.38 -- -- -- -- -- -0.0477 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 263.93 radiation 40.0 270 < th dose independent rect. 8 17
2 266.10 radiation 40.0 270 < th dose dependent rect. 8 18
13 269.01 temperature 15.0 10 > th dose independent rect. 9 18
20 269.72 wind 9.0 270 < th dose independent rect. 10 23
23 270.35 radiation 40.0 270 < th dose independent rect. 8 3
24 270.43 radiation 40.0 270 < th dose independent rect. 7 5
43 272.51 precipitation 0.1 10 < th dose independent rect. 3 6
44 272.51 precipitation 0.1 10 < th dose dependent rect. 3 6
48 272.85 temperature 10.0 43200 > th dose independent rect. 10 4
53 273.22 temperature 15.0 270 > th dose independent rect. 17 9
63 273.51 wind 7.0 90 < th dose independent rect. 13 20
64 273.56 atmosphere 1015.0 10 < th dose independent rect. 9 18
71 273.90 humidity 60.0 270 > th dose independent rect. 7 5
74 274.00 radiation 40.0 270 < th dose independent rect. 9 1
75 274.02 humidity 60.0 270 > th dose independent rect. 8 3
80 274.27 wind 7.0 270 < th dose independent rect. 9 1
81 274.29 humidity 60.0 90 > th dose independent rect. 3 6
87 274.46 atmosphere 1010.0 90 < th dose independent rect. 3 6
89 274.51 wind 9.0 90 < th dose independent rect. 3 6
90 274.51 temperature 10.0 90 > th dose independent rect. 3 6
93 274.51 atmosphere 995.0 90 > th dose independent rect. 3 6
96 274.55 atmosphere 995.0 90 > th dose independent rect. 9 18
98 274.66 precipitation 0.1 90 < th dose independent rect. 13 20
99 274.66 precipitation 0.1 90 < th dose dependent rect. 13 20
100 274.67 wind 7.0 10 < th dose independent rect. 3 6
103 274.69 temperature 30.0 90 < th dose independent rect. 3 6
113 274.99 temperature 10.0 10 > th dose independent rect. 3 6
115 274.99 temperature 30.0 10 < th dose independent rect. 3 6
116 274.99 humidity 50.0 10 > th dose independent rect. 3 6
118 274.99 atmosphere 995.0 10 > th dose independent rect. 3 6
119 274.99 atmosphere 1015.0 10 < th dose independent rect. 3 6
132 275.05 wind 9.0 30 < th dose dependent rect. 3 6
133 275.06 humidity 50.0 30 > th dose independent rect. 9 18
135 275.11 radiation 1.0 270 > th dose independent rect. 6 6
136 275.12 temperature 30.0 270 < th dose independent rect. 8 3
138 275.15 wind 1.0 270 > th dose independent rect. 9 1
139 275.15 humidity 50.0 270 > th dose independent rect. 9 1
147 275.39 humidity 50.0 10 > th dose independent rect. 9 4
149 275.40 temperature 10.0 270 > th dose independent rect. 9 1
150 275.40 atmosphere 995.0 270 > th dose independent rect. 9 1
151 275.40 atmosphere 1015.0 270 < th dose independent rect. 9 1
153 275.40 temperature 10.0 270 > th dose independent rect. 10 23
160 275.50 precipitation 0.1 10 < th dose independent rect. 9 18
161 275.50 precipitation 0.1 10 < th dose dependent rect. 9 18
164 275.54 precipitation 0.1 270 < th dose independent rect. 9 1
165 275.54 precipitation 0.1 270 < th dose dependent rect. 9 1
178 275.81 precipitation 0.1 10 < th dose independent rect. 13 20
179 275.81 precipitation 0.1 10 < th dose dependent rect. 13 20
182 275.86 radiation 40.0 90 < th dose independent rect. 3 6
190 275.96 precipitation 0.1 270 < th dose independent rect. 11 21
191 275.96 precipitation 0.1 270 < th dose dependent rect. 11 21
199 276.02 temperature 10.0 90 > th dose independent rect. 9 4
200 276.02 atmosphere 995.0 90 > th dose independent rect. 9 4
201 276.02 atmosphere 1015.0 90 < th dose independent rect. 9 4
202 276.02 temperature 10.0 90 > th dose independent rect. 13 20
205 276.04 precipitation 0.1 90 < th dose independent rect. 9 4
207 276.04 precipitation 0.1 90 < th dose dependent rect. 9 4
217 276.23 precipitation 0.1 90 < th dose independent rect. 9 18
218 276.23 precipitation 0.1 90 < th dose dependent rect. 9 18
219 276.24 wind 7.0 270 < th dose independent rect. 2 15
227 276.38 radiation 1.0 270 < th dose independent rect. 3 5
260 276.71 temperature 15.0 270 > th dose independent rect. 7 18
303 277.02 radiation 1.0 270 > th dose independent rect. 7 4
305 277.03 wind 7.0 90 < th dose independent rect. 13 7
306 277.06 radiation 1.0 90 > th dose independent rect. 9 4
322 277.29 radiation 10.0 270 < th dose independent rect. 16 10
323 277.31 wind 9.0 90 < th dose dependent rect. 13 20
325 277.34 humidity 50.0 90 > th dose dependent rect. 3 6
326 277.37 wind 1.0 270 > th dose independent rect. 6 6
335 277.51 radiation 1.0 270 < th dose dependent rect. 3 5
340 277.55 radiation 30.0 270 < th dose dependent rect. 16 10
350 277.63 temperature 15.0 10 > th dose independent rect. 21 16
353 277.65 wind 1.0 10 > th dose independent rect. 9 4
354 277.65 atmosphere 1015.0 90 < th dose dependent rect. 3 6
367 277.86 atmosphere 1000.0 10 > th dose independent rect. 9 5
371 277.88 radiation 40.0 270 < th dose dependent rect. 8 3
372 277.89 temperature 30.0 90 < th dose independent rect. 9 18
373 277.90 temperature 10.0 10 > th dose independent rect. 9 4
376 277.90 atmosphere 1015.0 10 < th dose independent rect. 9 4
377 277.90 precipitation 0.1 10 < th dose independent rect. 9 4
378 277.90 temperature 10.0 10 > th dose independent rect. 13 20
379 277.90 precipitation 0.1 10 < th dose dependent rect. 9 4
380 277.90 radiation 40.0 270 < th dose dependent rect. 7 5
381 277.91 temperature 10.0 1440 > th dose independent rect. 4 6
384 277.91 atmosphere 995.0 1440 > th dose independent rect. 4 6
385 277.91 atmosphere 1015.0 1440 < th dose independent rect. 4 6
386 277.91 temperature 10.0 1440 > th dose independent rect. 10 18
393 277.95 wind 9.0 30 < th dose independent rect. 9 18
394 277.99 precipitation 0.1 270 < th dose independent rect. 6 6
395 277.99 precipitation 0.1 270 < th dose dependent rect. 6 6
397 278.04 temperature 10.0 270 > th dose independent rect. 6 6
398 278.04 atmosphere 995.0 270 > th dose independent rect. 6 6
399 278.04 atmosphere 1015.0 270 < th dose independent rect. 6 6
418 278.15 atmosphere 995.0 270 > th dose dependent rect. 9 1
428 278.28 temperature 10.0 1440 > th dose independent rect. 10 4
431 278.28 atmosphere 995.0 1440 > th dose independent rect. 10 4
432 278.28 temperature 10.0 1440 > th dose independent rect. 14 20
438 278.32 temperature 15.0 270 > th dose independent rect. 2 15
447 278.41 humidity 70.0 270 > th dose independent rect. 7 19
500 278.74 wind 9.0 270 < th dose independent rect. 6 6
504 278.79 humidity 50.0 270 > th dose dependent rect. 1 6
506 278.80 radiation 40.0 90 < th dose dependent rect. 3 6
512 278.84 wind 9.0 10 < th dose independent rect. 9 4
527 278.97 atmosphere 995.0 10 > th dose dependent rect. 9 5
545 279.06 wind 1.0 90 > th dose independent rect. 20 17
560 279.20 wind 1.0 90 > th dose independent rect. 9 18
561 279.21 atmosphere 1010.0 10 < th dose independent rect. 20 7
584 279.36 humidity 50.0 10 > th dose dependent rect. 3 6
587 279.41 radiation 40.0 270 < th dose dependent rect. 1 6
589 279.42 temperature 10.0 90 > th dose dependent rect. 13 7
591 279.43 temperature 15.0 90 > th dose independent rect. 19 8
595 279.49 radiation 40.0 270 < th dose independent rect. 19 17
615 279.66 precipitation 0.1 270 < th dose independent rect. 2 15
616 279.66 precipitation 0.1 270 < th dose dependent rect. 2 15
619 279.68 atmosphere 995.0 90 > th dose independent rect. 13 20
636 279.80 temperature 30.0 270 < th dose independent rect. 7 19
657 279.93 temperature 10.0 10 > th dose dependent rect. 13 8
664 279.99 temperature 25.0 270 < th dose independent rect. 23 8
665 279.99 humidity 50.0 270 > th dose dependent rect. 8 3
683 280.07 atmosphere 1015.0 90 < th dose independent rect. 20 17
704 280.19 wind 1.0 270 > th dose independent rect. 7 18
707 280.22 humidity 60.0 270 > th dose independent rect. 19 17
726 280.27 atmosphere 1015.0 270 < th dose independent rect. 2 15
731 280.30 humidity 50.0 270 > th dose independent rect. 17 9
762 280.50 humidity 50.0 270 > th dose dependent rect. 9 1
807 280.73 wind 9.0 90 < th dose dependent rect. 13 7
830 280.82 humidity 50.0 270 > th dose dependent rect. 23 8
833 280.83 humidity 50.0 90 > th dose dependent rect. 9 18
838 280.88 humidity 90.0 90 < th dose independent rect. 8 5
839 280.90 radiation 40.0 270 < th dose dependent rect. 9 1
850 280.91 wind 9.0 270 < th dose dependent rect. 9 1
858 280.94 wind 9.0 270 < th dose independent rect. 17 9
863 280.97 temperature 30.0 90 < th dose dependent rect. 3 6
877 281.01 humidity 50.0 10 > th dose independent rect. 21 16
885 281.05 precipitation 0.1 90 < th dose independent rect. 13 7
886 281.05 atmosphere 995.0 270 > th dose independent rect. 17 9
888 281.05 precipitation 0.1 90 < th dose dependent rect. 13 7
905 281.12 atmosphere 995.0 10 > th dose independent rect. 13 20
915 281.18 temperature 15.0 10 > th dose independent rect. 20 7
924 281.20 temperature 10.0 30 > th dose dependent rect. 3 6
969 281.41 atmosphere 995.0 270 > th dose independent rect. 11 21