Os05g0458500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Laccase (EC 1.10.3.2).
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Os05g0458500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Laccase (EC 1.10.3.2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.04 | 0.29 | 3.12 | 0.0752 | 0.0116 | 0.606 | 0.306 | 0.407 | -0.0335 | 12.5 | 20.37 | 16 | -- | -- |
| 38.11 | 0.29 | 3.11 | 0.0882 | 0.0103 | 0.471 | 0.259 | -- | -0.0304 | 12.2 | 20.6 | 12 | -- | -- |
| 38.35 | 0.291 | 3.11 | 0.097 | 0.0306 | 0.526 | -- | 0.0979 | -0.0306 | 7.41 | 20.37 | 16 | -- | -- |
| 38.35 | 0.29 | 3.11 | 0.0995 | 0.031 | 0.488 | -- | -- | -0.0297 | 7.32 | 20.49 | 15 | -- | -- |
| 38.4 | 0.29 | 3.11 | 0.0969 | -- | 0.524 | -- | 0.102 | -0.0302 | -- | 20.37 | 12 | -- | -- |
| 39.72 | 0.295 | 3.12 | 0.011 | 0.0342 | -- | -0.298 | -- | -0.0656 | 1.12 | -- | -- | -- | -- |
| 40.04 | 0.296 | 3.12 | 0.021 | 0.0472 | -- | -- | -- | -0.0646 | 3.79 | -- | -- | -- | -- |
| 38.4 | 0.29 | 3.11 | 0.0999 | -- | 0.489 | -- | -- | -0.0295 | -- | 20.45 | 12 | -- | -- |
| 38.59 | 0.291 | 3.11 | -- | 0.0321 | 0.434 | -- | -- | -0.0437 | 6.63 | 20.49 | 15 | -- | -- |
| 40.16 | 0.296 | 3.12 | 0.0229 | -- | -- | -- | -- | -0.0633 | -- | -- | -- | -- | -- |
| 40.05 | 0.296 | 3.12 | -- | 0.0476 | -- | -- | -- | -0.0669 | 3.78 | -- | -- | -- | -- |
| 38.64 | 0.29 | 3.12 | -- | -- | 0.434 | -- | -- | -0.0431 | -- | 20.49 | 15 | -- | -- |
| 40.17 | 0.296 | 3.12 | -- | -- | -- | -- | -- | -0.0659 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.96 | humidity | 60 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 15 | 36.96 | humidity | 60 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 29 | 36.97 | humidity | 50 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 132 | 36.99 | humidity | 50 | 1440 | > th | dose independent | rect. | 17 | 10 |
| 182 | 37.01 | wind | 9 | 10 | > th | dose independent | rect. | 18 | 1 |
| 191 | 37.01 | wind | 9 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 203 | 37.03 | humidity | 50 | 1440 | > th | dose independent | rect. | 17 | 16 |
| 213 | 37.05 | humidity | 50 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 311 | 37.19 | humidity | 50 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 340 | 37.26 | humidity | 50 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 357 | 37.27 | humidity | 50 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 374 | 37.33 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 1 |
| 486 | 37.38 | humidity | 50 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 524 | 37.44 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 10 |
| 535 | 37.45 | humidity | 50 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 537 | 37.45 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 6 |
| 588 | 37.48 | wind | 9 | 90 | > th | dose independent | sin | 14 | NA |
| 619 | 37.51 | wind | 9 | 90 | > th | dose dependent | sin | 14 | NA |
| 621 | 37.52 | wind | 9 | 90 | > th | dose independent | rect. | 17 | 9 |
| 674 | 37.57 | wind | 9 | 90 | > th | dose independent | rect. | 13 | 5 |
| 676 | 37.57 | wind | 9 | 90 | > th | dose dependent | sin | 12 | NA |
| 680 | 37.58 | temperature | 25 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 688 | 37.62 | wind | 9 | 90 | > th | dose dependent | rect. | 13 | 5 |
| 692 | 37.64 | wind | 9 | 90 | > th | dose independent | rect. | 13 | 9 |
| 731 | 37.65 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 1 |
| 741 | 37.67 | wind | 9 | 90 | < th | dose independent | sin | 12 | NA |
| 800 | 37.68 | humidity | 50 | 720 | < th | dose dependent | sin | 7 | NA |
| 834 | 37.73 | humidity | 50 | 720 | < th | dose independent | sin | 7 | NA |
| 838 | 37.73 | wind | 9 | 90 | > th | dose dependent | rect. | 13 | 13 |
| 888 | 37.76 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 20 | 1 |
| 890 | 37.77 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 20 | 4 |
| 941 | 37.78 | temperature | 20 | 30 | > th | dose independent | rect. | 16 | 15 |
| 952 | 37.78 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 973 | 37.79 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 976 | 37.79 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 20 | 4 |
| 994 | 37.79 | temperature | 20 | 10 | < th | dose dependent | rect. | 23 | 13 |