Os05g0458400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AAA-metalloprotease FtsH.
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Os05g0458400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AAA-metalloprotease FtsH.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.69 | 0.192 | 11.8 | 0.198 | 0.812 | 1.15 | 0.0751 | -0.747 | -0.0791 | 12.4 | 30.94 | 347 | -- | -- |
| 17.1 | 0.193 | 11.9 | 0.0833 | 0.777 | 1.1 | 0.109 | -- | -0.0964 | 12.3 | 28.57 | 372 | -- | -- |
| 16.71 | 0.19 | 11.8 | 0.204 | 0.811 | 1.15 | -- | -0.766 | -0.0774 | 12.4 | 30.9 | 348 | -- | -- |
| 17.14 | 0.193 | 11.9 | 0.0758 | 0.786 | 1.1 | -- | -- | -0.0885 | 12.3 | 28.64 | 370 | -- | -- |
| 36.26 | 0.28 | 11.8 | 0.281 | -- | 1.36 | -- | -0.928 | 0.00354 | -- | 29.5 | 822 | -- | -- |
| 33.55 | 0.272 | 11.9 | -0.207 | 0.783 | -- | 0.0223 | -- | -0.324 | 10.8 | -- | -- | -- | -- |
| 33.55 | 0.271 | 11.9 | -0.206 | 0.783 | -- | -- | -- | -0.324 | 10.8 | -- | -- | -- | -- |
| 35.63 | 0.278 | 11.9 | 0.202 | -- | 1.47 | -- | -- | -0.0302 | -- | 28.9 | 832 | -- | -- |
| 17.28 | 0.194 | 11.9 | -- | 0.783 | 1.07 | -- | -- | -0.102 | 12.2 | 28.65 | 371 | -- | -- |
| 71.45 | 0.395 | 11.9 | -0.222 | -- | -- | -- | -- | -0.329 | -- | -- | -- | -- | -- |
| 34.67 | 0.275 | 11.9 | -- | 0.784 | -- | -- | -- | -0.301 | 10.8 | -- | -- | -- | -- |
| 36.55 | 0.282 | 11.9 | -- | -- | 1.37 | -- | -- | -0.0607 | -- | 28.85 | 825 | -- | -- |
| 72.75 | 0.398 | 11.9 | -- | -- | -- | -- | -- | -0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 2 | 16.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 3 | 16.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 7 | 16.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 9 | 16.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 29 | 16.87 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 44 | 16.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 78 | 16.97 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 109 | 17.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 131 | 17.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 146 | 17.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 12 |
| 178 | 17.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 179 | 17.10 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 209 | 17.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 211 | 17.12 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 486 | 17.32 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 524 | 17.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 540 | 17.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 556 | 17.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 572 | 17.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 684 | 17.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 688 | 17.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |