Os05g0458300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Laccase (EC 1.10.3.2).
FiT-DB / Search/ Help/ Sample detail
|
Os05g0458300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Laccase (EC 1.10.3.2).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 195.94 | 0.658 | 6.85 | 1.21 | 2.03 | 2.78 | 0.726 | 0.733 | -0.188 | 7.81 | 25.13 | 1500 | -- | -- |
| 196.43 | 0.653 | 6.83 | 1.35 | 2.03 | 2.7 | 0.704 | -- | -0.158 | 7.81 | 25.3 | 1500 | -- | -- |
| 197.45 | 0.654 | 6.84 | 1.25 | 2.03 | 2.77 | -- | 0.651 | -0.183 | 7.84 | 25.2 | 1518 | -- | -- |
| 197.88 | 0.655 | 6.83 | 1.36 | 2.03 | 2.71 | -- | -- | -0.156 | 7.83 | 25.3 | 1501 | -- | -- |
| 279.17 | 0.778 | 6.87 | 1.56 | -- | 3.88 | -- | -0.655 | -0.101 | -- | 33.83 | 581 | -- | -- |
| 294.79 | 0.805 | 6.96 | 0.518 | 2 | -- | 0.83 | -- | -0.733 | 7.92 | -- | -- | -- | -- |
| 296.81 | 0.807 | 6.96 | 0.54 | 2 | -- | -- | -- | -0.734 | 7.94 | -- | -- | -- | -- |
| 279.68 | 0.779 | 6.88 | 1.47 | -- | 3.9 | -- | -- | -0.135 | -- | 41.47 | 580 | -- | -- |
| 238.2 | 0.719 | 6.91 | -- | 1.94 | 2 | -- | -- | -0.47 | 7.5 | 25.62 | 1122 | -- | -- |
| 514.64 | 1.06 | 7.01 | 0.561 | -- | -- | -- | -- | -0.708 | -- | -- | -- | -- | -- |
| 304.51 | 0.816 | 6.97 | -- | 2 | -- | -- | -- | -0.794 | 7.92 | -- | -- | -- | -- |
| 331.4 | 0.848 | 6.93 | -- | -- | 3.38 | -- | -- | -0.363 | -- | 56.2 | 553 | -- | -- |
| 522.95 | 1.07 | 7.02 | -- | -- | -- | -- | -- | -0.77 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.79 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 2 | 189.51 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 5 | 190.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 10 | 190.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 22 | 191.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 55 | 191.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 65 | 192.16 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 510 | 196.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 521 | 196.11 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 547 | 196.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 841 | 198.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 863 | 198.12 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 869 | 198.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 878 | 198.20 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 918 | 198.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 933 | 198.47 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |