Os05g0457000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0457000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126 | 0.527 | 3.02 | -0.0347 | 0.104 | 4.25 | -0.232 | 6.94 | 0.261 | 9 | 10.21 | 65 | -- | -- |
| 126.63 | 0.524 | 3.01 | -0.0472 | 0.105 | 2.86 | -0.304 | -- | 0.27 | 7.14 | 10.19 | 58 | -- | -- |
| 126.03 | 0.523 | 3.03 | -0.0477 | 0.106 | 4.9 | -- | 10.8 | 0.255 | 10.7 | 10.4 | 56 | -- | -- |
| 126.5 | 0.524 | 3.01 | -0.0755 | 0.102 | 2.57 | -- | -- | 0.261 | 8.64 | 10.2 | 61 | -- | -- |
| 126.04 | 0.523 | 3.05 | 0.0198 | -- | 7.42 | -- | 21.7 | 0.255 | -- | 10.4 | 52 | -- | -- |
| 135.84 | 0.546 | 3.02 | -0.146 | 0.102 | -- | -0.217 | -- | 0.236 | 11.1 | -- | -- | -- | -- |
| 136.03 | 0.546 | 3.02 | -0.155 | 0.103 | -- | -- | -- | 0.235 | 10.9 | -- | -- | -- | -- |
| 127.06 | 0.525 | 3.01 | -0.0692 | -- | 2.57 | -- | -- | 0.265 | -- | 10.2 | 61 | -- | -- |
| 126.62 | 0.524 | 3.01 | -- | 0.0989 | 2.61 | -- | -- | 0.273 | 9.09 | 10.2 | 61 | -- | -- |
| 136.7 | 0.546 | 3.02 | -0.157 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 136.67 | 0.547 | 3.01 | -- | 0.105 | -- | -- | -- | 0.252 | 11 | -- | -- | -- | -- |
| 127.19 | 0.525 | 3.01 | -- | -- | 2.61 | -- | -- | 0.274 | -- | 10.2 | 62 | -- | -- |
| 137.35 | 0.547 | 3.02 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.19 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 10 | 122.19 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 133 | 130.36 | wind | 5 | 30 | > th | dose dependent | rect. | 24 | 8 |
| 163 | 130.77 | wind | 5 | 30 | > th | dose independent | rect. | 24 | 8 |
| 205 | 130.94 | wind | 5 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 207 | 130.95 | wind | 5 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 210 | 130.96 | wind | 5 | 90 | > th | dose independent | rect. | 5 | 3 |
| 235 | 131.00 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 249 | 131.00 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 381 | 131.45 | wind | 9 | 270 | > th | dose independent | sin | 3 | NA |
| 400 | 131.50 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 1 | 15 |
| 419 | 131.57 | wind | 5 | 10 | > th | dose independent | rect. | 3 | 5 |
| 454 | 131.63 | wind | 9 | 270 | > th | dose dependent | sin | 3 | NA |
| 455 | 131.64 | wind | 5 | 10 | > th | dose independent | rect. | 7 | 1 |
| 481 | 131.69 | wind | 9 | 270 | < th | dose independent | sin | 3 | NA |
| 521 | 131.83 | wind | 9 | 90 | > th | dose dependent | sin | 21 | NA |
| 604 | 132.03 | humidity | 80 | 30 | < th | dose independent | rect. | 1 | 1 |
| 617 | 132.03 | humidity | 80 | 30 | < th | dose dependent | rect. | 1 | 1 |
| 709 | 132.18 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 11 | 5 |
| 741 | 132.25 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 11 | 5 |
| 745 | 132.26 | temperature | 25 | 10 | > th | dose independent | rect. | 20 | 11 |
| 770 | 132.31 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 13 |
| 836 | 132.39 | wind | 7 | 90 | < th | dose independent | rect. | 7 | 12 |
| 862 | 132.42 | radiation | 10 | 720 | < th | dose dependent | rect. | 10 | 2 |
| 925 | 132.51 | wind | 1 | 30 | > th | dose dependent | rect. | 11 | 5 |
| 981 | 132.54 | wind | 9 | 90 | > th | dose dependent | no | NA | NA |
| 1000 | 132.54 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 19 | 21 |