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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0456700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.032) R2 : 0.00341
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.084 (0.0673) R2dN8 : 0.0044 R2N8 : 0.00341
σ : 0.602
deviance : 166.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
158.68 0.592 2.91 -0.289 0.258 0.118 -0.639 -1.36 0.0333 9.55 87.71 652 -- --
162.83 0.599 2.92 -0.206 0.209 -0.0618 -0.0561 -- 0.0764 10.9 88.77 668 -- --
159.77 0.589 2.91 -0.295 0.249 0.0937 -- -1.02 0.0316 9.72 88 597 -- --
161.97 0.593 2.91 -0.273 0.131 -0.294 -- -- 0.12 11 91.37 2280 -- --
162.38 0.593 2.92 -0.214 -- -0.048 -- -0.876 0.0943 -- 87 617 -- --
163.07 0.599 2.92 -0.197 0.191 -- -0.0717 -- 0.062 10.1 -- -- -- --
163.09 0.598 2.92 -0.2 0.191 -- -- -- 0.0617 10.1 -- -- -- --
162.73 0.594 2.91 -0.217 -- -0.406 -- -- 0.151 -- 94 2640 -- --
162.94 0.595 2.9 -- 0.177 -0.257 -- -- 0.142 11 91 7482 -- --
165.3 0.601 2.93 -0.203 -- -- -- -- 0.0615 -- -- -- -- --
164.15 0.599 2.92 -- 0.192 -- -- -- 0.0841 10.1 -- -- -- --
162.66 0.594 2.9 -- -- -0.429 -- -- 0.17 -- 89.6 16716 -- --
166.38 0.602 2.92 -- -- -- -- -- 0.084 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 148.75 humidity 90 30 < th dose independent rect. 3 2
2 148.79 humidity 90 10 < th dose dependent rect. 3 2
29 151.20 humidity 90 720 < th dose independent rect. 2 2
46 151.73 wind 1 90 < th dose dependent rect. 4 1
51 152.07 wind 1 90 < th dose independent rect. 4 1
54 152.80 humidity 90 720 < th dose dependent rect. 3 1
55 152.87 humidity 90 720 < th dose dependent rect. 2 3
60 153.26 atmosphere 1005 90 > th dose dependent rect. 3 1
68 154.00 atmosphere 1005 10 > th dose dependent rect. 3 2
70 154.30 humidity 60 10 < th dose dependent rect. 15 20
75 154.39 humidity 60 10 < th dose independent rect. 15 20
79 154.53 humidity 60 90 < th dose independent rect. 15 19
100 155.23 humidity 80 720 > th dose dependent rect. 24 5
103 155.28 wind 9 1440 > th dose independent rect. 22 4
111 155.28 wind 9 1440 > th dose dependent rect. 22 4
119 155.29 wind 9 1440 > th dose independent rect. 22 1
123 155.29 wind 9 1440 > th dose dependent rect. 22 1
128 155.39 humidity 90 720 > th dose independent rect. 3 1
130 155.40 radiation 10 10 > th dose dependent rect. 15 19
137 155.56 humidity 80 720 > th dose independent rect. 23 8
156 155.59 wind 9 90 > th dose independent rect. 22 12
157 155.59 wind 9 90 > th dose dependent rect. 22 12
170 155.68 humidity 60 10 < th dose independent sin 11 NA
222 155.75 humidity 50 720 > th dose dependent rect. 23 8
291 155.98 humidity 60 270 < th dose independent rect. 19 14
307 156.02 humidity 60 270 < th dose dependent rect. 19 14
334 156.29 humidity 60 10 > th dose independent sin 11 NA
343 156.34 temperature 20 10 < th dose dependent rect. 3 1
360 156.47 humidity 90 720 < th dose dependent rect. 22 11
368 156.54 radiation 20 10 > th dose dependent rect. 9 1
373 156.57 humidity 60 1440 > th dose independent rect. 6 3
383 156.62 radiation 20 10 > th dose independent rect. 15 19
392 156.68 humidity 60 10 < th dose dependent sin 11 NA
432 156.98 humidity 90 720 < th dose dependent sin 10 NA
460 157.14 humidity 90 720 < th dose dependent rect. 17 17
470 157.21 humidity 60 1440 > th dose independent rect. 22 11
471 157.21 wind 1 90 < th dose dependent rect. 4 5
475 157.23 humidity 90 720 < th dose dependent rect. 19 15
484 157.27 humidity 60 270 < th dose independent rect. 8 1
510 157.27 humidity 60 270 < th dose dependent rect. 8 1
550 157.32 humidity 60 1440 > th dose independent rect. 20 13
619 157.42 radiation 40 10 > th dose dependent sin 12 NA
625 157.43 humidity 60 720 > th dose dependent rect. 19 12
634 157.45 wind 1 4320 < th dose dependent rect. 3 2
636 157.46 radiation 40 10 > th dose independent rect. 13 21
657 157.48 temperature 20 90 < th dose independent rect. 2 1
658 157.48 humidity 60 1440 > th dose independent rect. 1 8
664 157.49 radiation 40 10 > th dose independent sin 12 NA
667 157.49 humidity 60 720 > th dose dependent sin 10 NA
668 157.49 radiation 1 30 < th dose dependent rect. 5 1
674 157.50 humidity 90 720 < th dose independent rect. 23 10
707 157.55 radiation 40 30 > th dose dependent rect. 9 1
729 157.56 radiation 40 90 > th dose independent rect. 15 18
739 157.59 radiation 1 90 < th dose independent rect. 8 5
742 157.59 radiation 1 90 < th dose dependent rect. 8 5
775 157.63 humidity 60 10 < th dose independent rect. 9 1
839 157.63 humidity 60 10 < th dose dependent rect. 9 1
925 157.66 wind 1 10 < th dose independent rect. 9 3
967 157.67 humidity 50 720 > th dose dependent rect. 18 15
989 157.69 radiation 20 10 > th dose independent rect. 9 1