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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0456300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Aldose reductase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.47 (0.0486) R2 : 0.52
β1 : -3.02 (0.183) R2dD : 0.315 R2D : 0.0575
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.5 (0.147) R2dE : 0.328 R2E : 0.125
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.08 (0.104) R2dN8 : 0.153 R2N8 : 0.0263
σ : 0.908
deviance : 380.26
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.83
memory length : 1181
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
361.37 0.893 5.66 -4.53 0.297 3.04 -0.924 -6.1 -1.4 20.8 25.96 1232 -- --
371.05 0.897 5.48 -3.04 0.325 2.39 -1.1 -- -1.04 21.2 26.16 1231 -- --
364.1 0.889 5.67 -4.59 0.302 3.06 -- -6.39 -1.44 21.1 25.88 1234 -- --
375.13 0.902 5.47 -3 0.343 2.36 -- -- -1.04 21.2 26.13 1241 -- --
368.08 0.894 5.67 -4.56 -- 3.17 -- -6.46 -1.46 -- 25.7 1184 -- --
596.01 1.14 5.45 -2.28 0.65 -- -0.4 -- -0.917 23.3 -- -- -- --
596.65 1.14 5.45 -2.27 0.652 -- -- -- -0.916 23.5 -- -- -- --
380.26 0.908 5.47 -3.02 -- 2.5 -- -- -1.08 -- 25.83 1181 -- --
590.99 1.13 5.35 -- 0.415 1.67 -- -- -0.501 21.6 28.31 1226 -- --
623.32 1.17 5.43 -2.25 -- -- -- -- -0.909 -- -- -- -- --
731.87 1.27 5.39 -- 0.629 -- -- -- -0.663 23.2 -- -- -- --
599.43 1.14 5.34 -- -- 1.83 -- -- -0.494 -- 28 1181 -- --
756.58 1.28 5.38 -- -- -- -- -- -0.659 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 376.27 temperature 25 1440 > th dose dependent rect. 13 11
7 377.02 temperature 25 1440 > th dose dependent rect. 11 13
16 377.56 temperature 25 1440 > th dose dependent rect. 13 20
19 377.68 temperature 25 1440 > th dose dependent sin 18 NA
25 377.86 temperature 25 1440 > th dose dependent rect. 15 4
32 378.19 temperature 25 1440 > th dose dependent rect. 11 21
81 379.54 temperature 25 720 > th dose dependent rect. 17 16
109 380.38 temperature 25 1440 > th dose dependent rect. 6 18
190 381.84 temperature 25 1440 > th dose dependent no NA NA
201 382.04 temperature 25 1440 > th dose dependent rect. 20 23
356 392.02 temperature 30 1440 < th dose independent rect. 14 22
359 392.79 temperature 30 1440 < th dose independent sin 15 NA
363 392.95 temperature 30 1440 < th dose independent rect. 9 18
369 393.01 temperature 30 1440 < th dose independent rect. 9 22
370 393.02 temperature 30 1440 < th dose independent rect. 9 16
373 393.07 temperature 30 1440 < th dose independent rect. 9 11
390 393.43 temperature 30 1440 > th dose independent sin 14 NA
392 393.44 temperature 30 1440 < th dose independent rect. 17 23
399 393.69 temperature 30 1440 > th dose independent rect. 14 22
415 394.03 temperature 30 1440 > th dose independent rect. 15 4
464 394.30 temperature 30 1440 < th dose independent rect. 15 12
466 394.30 temperature 30 1440 < th dose independent rect. 6 21
479 394.37 temperature 30 1440 < th dose independent rect. 6 19
491 394.40 temperature 30 1440 < th dose independent rect. 23 21
494 394.41 temperature 30 1440 < th dose independent rect. 6 14
507 394.43 temperature 30 1440 < th dose independent no NA NA
511 394.43 temperature 30 1440 < th dose independent rect. 2 23
518 394.45 temperature 30 1440 < th dose independent rect. 15 10
536 394.48 temperature 30 1440 < th dose independent rect. 15 16
610 394.57 temperature 30 1440 < th dose independent rect. 15 5
818 395.15 temperature 30 1440 > th dose independent rect. 9 10
882 395.88 temperature 30 1440 > th dose independent rect. 17 23
951 396.77 temperature 30 1440 > th dose independent no NA NA