FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0456200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Aldose reductase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0217) R2 : 0.00383
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0606 (0.0458) R2dN8 : 0.00494 R2N8 : 0.00383
σ : 0.409
deviance : 76.94
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
75.01 0.407 2.98 0.0977 0.27 0.305 -0.797 -1.04 0.0855 13.9 11.85 257 -- --
75.68 0.405 2.99 0.067 0.0958 0.228 0.259 -- 0.0826 13.1 42.39 284 -- --
75.31 0.404 2.99 0.0824 0.264 0.307 -- -0.424 0.0854 13.8 14.42 270 -- --
75.83 0.406 2.98 0.0794 0.201 0.265 -- -- 0.0867 13.9 19.21 279 -- --
75.75 0.405 2.99 0.0716 -- 0.0974 -- -0.378 0.0735 -- 22.4 251 -- --
76.44 0.41 2.99 0.0561 0.028 -- -0.274 -- 0.0666 23.8 -- -- -- --
76.62 0.41 2.99 0.0655 0.06 -- -- -- 0.0665 3.88 -- -- -- --
76.13 0.406 2.99 0.072 -- 0.139 -- -- 0.0773 -- 56.07 347 -- --
76 0.406 2.99 -- 0.182 0.252 -- -- 0.0752 13.9 19.89 283 -- --
76.82 0.41 2.99 0.0679 -- -- -- -- 0.0681 -- -- -- -- --
76.74 0.41 2.99 -- 0.0613 -- -- -- 0.0592 3.86 -- -- -- --
76.26 0.407 2.99 -- -- 0.138 -- -- 0.0689 -- 70.06 347 -- --
76.94 0.409 2.99 -- -- -- -- -- 0.0606 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 70.76 atmosphere 1000.0 90 < th dose independent rect. 5 2
2 70.80 atmosphere 1000.0 90 < th dose dependent rect. 5 2
3 70.94 atmosphere 1000.0 10 < th dose dependent rect. 5 3
12 71.03 atmosphere 1000.0 10 < th dose independent rect. 5 3
26 71.77 wind 7.0 10 > th dose dependent rect. 9 1
34 71.94 radiation 10.0 90 < th dose dependent rect. 8 2
36 72.10 atmosphere 1000.0 10 < th dose independent rect. 5 1
44 72.10 atmosphere 1000.0 10 < th dose dependent rect. 5 1
68 72.31 wind 9.0 1440 < th dose independent rect. 23 1
69 72.31 temperature 10.0 1440 > th dose independent rect. 23 1
72 72.31 temperature 30.0 1440 < th dose independent rect. 23 1
76 72.31 humidity 50.0 1440 > th dose independent rect. 23 1
86 72.31 atmosphere 995.0 1440 > th dose independent rect. 23 1
87 72.31 radiation 1.0 1440 < th dose independent rect. 23 1
107 72.31 temperature 10.0 1440 > th dose independent rect. 24 23
110 72.31 radiation 1.0 1440 < th dose dependent rect. 23 1
121 72.37 temperature 25.0 30 > th dose independent rect. 22 1
124 72.38 temperature 25.0 30 > th dose dependent rect. 22 1
126 72.40 atmosphere 1005.0 30 > th dose dependent rect. 22 1
129 72.43 humidity 90.0 30 < th dose independent rect. 22 1
131 72.44 humidity 80.0 30 > th dose independent rect. 22 1
134 72.45 wind 3.0 30 < th dose independent rect. 22 1
138 72.46 atmosphere 1005.0 30 > th dose independent rect. 22 1
141 72.47 wind 5.0 30 < th dose dependent rect. 22 1
146 72.49 wind 1.0 30 > th dose independent rect. 22 1
151 72.50 precipitation 0.1 30 < th dose independent rect. 22 1
153 72.50 precipitation 0.1 30 < th dose dependent rect. 22 1
159 72.51 temperature 10.0 30 > th dose independent rect. 22 1
161 72.51 temperature 30.0 30 < th dose independent rect. 22 1
162 72.51 humidity 50.0 30 > th dose independent rect. 22 1
166 72.51 atmosphere 1010.0 30 < th dose independent rect. 22 1
168 72.51 radiation 1.0 30 < th dose independent rect. 22 1
173 72.51 temperature 10.0 30 > th dose independent rect. 23 23
174 72.51 radiation 1.0 30 < th dose dependent rect. 22 1
179 72.51 atmosphere 1005.0 30 > th dose dependent rect. 20 3
180 72.52 humidity 50.0 30 > th dose dependent rect. 22 1
188 72.59 humidity 90.0 30 < th dose dependent rect. 22 1
190 72.65 wind 1.0 30 > th dose dependent rect. 22 1
192 72.66 humidity 80.0 30 > th dose independent rect. 2 1
193 72.66 wind 5.0 30 < th dose dependent rect. 2 1
194 72.67 wind 3.0 30 < th dose independent rect. 2 1
195 72.67 temperature 25.0 30 < th dose independent rect. 2 1
199 72.67 atmosphere 1015.0 30 < th dose dependent rect. 22 1
201 72.68 wind 9.0 30 < th dose independent rect. 2 1
202 72.68 temperature 10.0 30 > th dose independent rect. 2 1
205 72.68 humidity 50.0 30 > th dose independent rect. 2 1
208 72.68 atmosphere 995.0 30 > th dose independent rect. 2 1
209 72.68 atmosphere 1010.0 30 < th dose independent rect. 2 1
211 72.68 radiation 1.0 30 < th dose independent rect. 2 1
216 72.68 precipitation 0.1 30 < th dose independent rect. 2 1
217 72.68 temperature 10.0 30 > th dose independent rect. 3 23
218 72.68 temperature 10.0 30 > th dose dependent rect. 2 1
219 72.68 humidity 50.0 30 > th dose dependent rect. 2 1
222 72.68 atmosphere 995.0 30 > th dose dependent rect. 2 1
225 72.68 radiation 1.0 30 < th dose dependent rect. 2 1
231 72.68 precipitation 0.1 30 < th dose dependent rect. 2 1
235 72.70 atmosphere 1005.0 30 > th dose independent rect. 2 1
239 72.72 wind 7.0 10 > th dose independent rect. 9 1
245 72.72 wind 9.0 30 < th dose independent rect. 23 23
254 72.75 atmosphere 1015.0 30 < th dose dependent rect. 2 1
256 72.76 temperature 30.0 30 < th dose dependent rect. 22 1
258 72.78 temperature 30.0 30 < th dose dependent rect. 2 1
283 73.02 temperature 25.0 30 > th dose independent rect. 20 4
295 73.07 wind 1.0 30 > th dose independent rect. 2 1
312 73.14 atmosphere 1000.0 10 < th dose independent rect. 2 7
339 73.15 atmosphere 1000.0 10 < th dose dependent rect. 2 7
348 73.18 radiation 10.0 90 < th dose independent rect. 8 2
398 73.26 atmosphere 1005.0 30 > th dose independent rect. 20 3
400 73.26 wind 9.0 30 < th dose independent rect. 3 23
403 73.26 temperature 25.0 30 > th dose dependent rect. 20 4
409 73.28 humidity 90.0 30 < th dose independent rect. 20 3
483 73.58 atmosphere 1000.0 30 > th dose independent rect. 23 21
511 73.69 temperature 25.0 720 > th dose dependent rect. 24 8
516 73.72 radiation 10.0 10 < th dose independent rect. 9 1
534 73.75 temperature 25.0 720 > th dose dependent rect. 23 10
544 73.78 temperature 25.0 720 > th dose independent rect. 24 9
576 73.88 wind 1.0 30 > th dose independent rect. 23 21
588 73.91 temperature 10.0 30 > th dose dependent rect. 23 21
611 74.00 atmosphere 1005.0 270 > th dose independent rect. 19 1
627 74.06 wind 5.0 30 < th dose independent rect. 20 3
631 74.07 radiation 10.0 90 < th dose dependent rect. 8 15
644 74.12 atmosphere 1000.0 90 > th dose independent rect. 23 10
648 74.12 radiation 10.0 90 < th dose dependent rect. 8 7
666 74.16 wind 1.0 30 > th dose independent rect. 20 3
688 74.20 radiation 20.0 43200 < th dose dependent rect. 21 3
693 74.21 temperature 10.0 1440 > th dose independent rect. 21 3
696 74.21 temperature 30.0 1440 < th dose independent rect. 21 3
700 74.21 humidity 50.0 1440 > th dose independent rect. 21 3
706 74.21 atmosphere 995.0 1440 > th dose independent rect. 21 3
707 74.21 radiation 1.0 1440 < th dose independent rect. 21 3
727 74.21 precipitation 0.1 1440 < th dose independent rect. 21 3
730 74.21 temperature 10.0 1440 > th dose independent rect. 24 21
734 74.21 radiation 1.0 1440 < th dose dependent rect. 21 3
739 74.21 radiation 40.0 14400 < th dose dependent rect. 21 3
743 74.21 precipitation 0.1 1440 < th dose dependent rect. 21 3
750 74.21 radiation 10.0 270 < th dose dependent rect. 6 15
767 74.23 temperature 25.0 270 > th dose dependent rect. 20 1
777 74.25 temperature 10.0 30 > th dose independent rect. 20 3
779 74.25 temperature 30.0 30 < th dose independent rect. 20 3
780 74.25 humidity 50.0 30 > th dose independent rect. 20 3
785 74.25 atmosphere 1010.0 30 < th dose independent rect. 20 3
787 74.25 radiation 1.0 30 < th dose independent rect. 20 3
792 74.25 precipitation 0.1 30 < th dose independent rect. 20 3
798 74.25 temperature 10.0 30 > th dose independent rect. 23 21
799 74.25 atmosphere 995.0 30 > th dose independent rect. 23 23
803 74.25 radiation 1.0 30 < th dose dependent rect. 20 3
809 74.25 precipitation 0.1 30 < th dose dependent rect. 20 3
818 74.27 radiation 10.0 90 < th dose independent rect. 8 15
819 74.27 wind 9.0 30 < th dose independent rect. 23 21
832 74.29 wind 9.0 30 < th dose dependent rect. 20 3
833 74.29 humidity 90.0 30 < th dose dependent rect. 20 3
841 74.30 precipitation 0.1 30 < th dose independent rect. 23 21
845 74.30 precipitation 0.1 30 < th dose dependent rect. 23 21
855 74.32 temperature 25.0 10 > th dose independent rect. 24 20
857 74.33 wind 3.0 270 > th dose independent rect. 19 2
890 74.34 temperature 25.0 720 < th dose independent rect. 1 8
891 74.34 atmosphere 1000.0 720 > th dose independent rect. 21 8
898 74.34 radiation 10.0 10 < th dose dependent rect. 6 5
926 74.38 atmosphere 1000.0 270 > th dose independent rect. 21 21
935 74.39 atmosphere 1000.0 30 > th dose independent rect. 21 23
950 74.41 humidity 80.0 10 > th dose independent rect. 9 1