Os05g0456000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial glycoprotein family protein.
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Os05g0456000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochondrial glycoprotein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.33 | 0.53 | 7.83 | 0.836 | 1.6 | -1.58 | 0.997 | 0.618 | 0.0712 | 17.3 | 29.8 | 93 | -- | -- |
| 127.76 | 0.526 | 7.82 | 0.929 | 1.59 | -1.61 | 0.834 | -- | 0.0957 | 17.4 | 29.8 | 95 | -- | -- |
| 129.45 | 0.53 | 7.82 | 0.898 | 1.59 | -1.6 | -- | 0.236 | 0.0988 | 17.3 | 30.06 | 109 | -- | -- |
| 129.44 | 0.53 | 7.82 | 0.936 | 1.59 | -1.61 | -- | -- | 0.102 | 17.3 | 29.9 | 109 | -- | -- |
| 226.41 | 0.701 | 7.83 | 0.589 | -- | -3.3 | -- | 0.0783 | -0.0717 | -- | 66.82 | 175 | -- | -- |
| 161.44 | 0.596 | 7.75 | 1.33 | 2.04 | -- | 0.944 | -- | 0.411 | 16.8 | -- | -- | -- | -- |
| 163.75 | 0.599 | 7.75 | 1.33 | 2.04 | -- | -- | -- | 0.416 | 16.8 | -- | -- | -- | -- |
| 226.42 | 0.701 | 7.83 | 0.602 | -- | -3.3 | -- | -- | -0.0686 | -- | 77.62 | 175 | -- | -- |
| 149.88 | 0.57 | 7.86 | -- | 1.46 | -2.01 | -- | -- | -0.0764 | 17.5 | 29.8 | 109 | -- | -- |
| 384.72 | 0.917 | 7.73 | 1.25 | -- | -- | -- | -- | 0.363 | -- | -- | -- | -- | -- |
| 210.38 | 0.678 | 7.78 | -- | 2.02 | -- | -- | -- | 0.268 | 16.8 | -- | -- | -- | -- |
| 235.32 | 0.714 | 7.85 | -- | -- | -3.5 | -- | -- | -0.158 | -- | 82 | 176 | -- | -- |
| 426.15 | 0.964 | 7.76 | -- | -- | -- | -- | -- | 0.224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.71 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 3 | 114.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 7 | 116.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 29 | 119.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 48 | 122.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 55 | 122.34 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 89 | 123.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 99 | 124.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 100 | 124.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 107 | 124.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 112 | 124.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 118 | 124.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 125 | 125.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 150 | 125.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 167 | 126.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 206 | 126.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 233 | 127.34 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 241 | 127.48 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 261 | 127.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 273 | 128.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 22 |
| 310 | 128.69 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 347 | 129.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 452 | 130.23 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 20 |
| 488 | 130.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 546 | 131.52 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 583 | 131.94 | temperature | 10 | 90 | > th | dose dependent | sin | 5 | NA |
| 662 | 132.72 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 14 |
| 670 | 132.78 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 682 | 132.91 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 684 | 132.92 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 691 | 132.94 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 15 |
| 732 | 133.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 736 | 133.20 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 766 | 133.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 771 | 133.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 794 | 133.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 12 |
| 807 | 133.61 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 827 | 133.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 870 | 133.83 | humidity | 80 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 873 | 133.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 12 |
| 893 | 133.91 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 941 | 134.06 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 974 | 134.17 | humidity | 80 | 43200 | < th | dose dependent | rect. | 2 | 7 |