Os05g0455900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os05g0455900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 148.95 | 0.573 | 7.54 | 0.747 | 0.696 | 1.52 | 0.934 | 1.76 | -0.603 | 15.5 | 69 | 7464 | -- | -- |
| 153.33 | 0.577 | 7.52 | 0.713 | 0.651 | 1.56 | 0.906 | -- | -0.597 | 15.4 | 69 | 7541 | -- | -- |
| 151.18 | 0.573 | 7.54 | 0.774 | 0.678 | 1.47 | -- | 1.77 | -0.608 | 15.1 | 68.95 | 7624 | -- | -- |
| 155.3 | 0.58 | 7.54 | 0.656 | 0.652 | 1.51 | -- | -- | -0.698 | 15.1 | 69.81 | 7618 | -- | -- |
| 176.91 | 0.619 | 7.53 | 0.759 | -- | 1.59 | -- | 1.49 | -0.638 | -- | 68.92 | 7635 | -- | -- |
| 193.61 | 0.652 | 7.48 | 0.467 | 0.739 | -- | 0.748 | -- | -0.424 | 15.7 | -- | -- | -- | -- |
| 195.29 | 0.654 | 7.48 | 0.479 | 0.741 | -- | -- | -- | -0.42 | 15.6 | -- | -- | -- | -- |
| 179.39 | 0.624 | 7.54 | 0.643 | -- | 1.62 | -- | -- | -0.735 | -- | 69.79 | 7621 | -- | -- |
| 166.47 | 0.601 | 7.54 | -- | 0.656 | 1.4 | -- | -- | -0.708 | 15.4 | 70 | 7506 | -- | -- |
| 225.93 | 0.702 | 7.48 | 0.448 | -- | -- | -- | -- | -0.44 | -- | -- | -- | -- | -- |
| 201.33 | 0.664 | 7.49 | -- | 0.732 | -- | -- | -- | -0.474 | 15.6 | -- | -- | -- | -- |
| 190 | 0.642 | 7.56 | -- | -- | 1.5 | -- | -- | -0.822 | -- | 70.14 | 7618 | -- | -- |
| 231.22 | 0.71 | 7.49 | -- | -- | -- | -- | -- | -0.49 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 148.95 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 2 | 149.26 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 5 | 149.45 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 6 | 149.60 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 7 | 8 |
| 8 | 149.63 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 8 | 7 |
| 9 | 149.64 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 23 | 149.79 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 19 |
| 24 | 149.79 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 35 | 149.88 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 9 | 3 |
| 61 | 150.09 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 7 | 14 |
| 82 | 150.19 | humidity | 80.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 125 | 150.34 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 20 |
| 151 | 150.42 | humidity | 70.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 179 | 150.53 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 234 | 150.70 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 3 |
| 323 | 150.93 | humidity | 50.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 333 | 150.96 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 340 | 150.98 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 379 | 151.07 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 391 | 151.11 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 413 | 151.14 | humidity | 80.0 | 14400 | < th | dose dependent | no | NA | NA |
| 428 | 151.17 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 487 | 151.27 | humidity | 70.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 488 | 151.27 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 493 | 151.28 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 496 | 151.28 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 601 | 151.54 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 20 | 17 |
| 645 | 151.66 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 659 | 151.69 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 668 | 151.73 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 21 |
| 670 | 151.74 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 675 | 151.76 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 7 | 6 |
| 689 | 151.77 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 14 |
| 698 | 151.78 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 705 | 151.79 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 716 | 151.81 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 21 |
| 733 | 151.83 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 736 | 151.83 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 747 | 151.86 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 10 |
| 782 | 151.92 | humidity | 70.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 795 | 151.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 812 | 151.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 975 | 152.40 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 980 | 152.42 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 997 | 152.48 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 2 |