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Os05g0455500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Delta 1-pyrroline-5-carboxylate synthetase (P5CS) [Includes: Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.84 | 0.332 | 10.6 | -1.12 | 0.707 | 0.364 | -0.148 | 1.68 | -0.289 | 6.34 | 1.232 | 10 | -- | -- |
| 55.61 | 0.35 | 10.6 | -1.07 | 0.722 | 0.288 | 0.513 | -- | -0.276 | 7.32 | 29.15 | 14 | -- | -- |
| 49.89 | 0.329 | 10.6 | -1.12 | 0.708 | 0.355 | -- | 1.67 | -0.288 | 6.39 | 1.989 | 9 | -- | -- |
| 55.98 | 0.348 | 10.6 | -1.06 | 0.724 | 0.346 | -- | -- | -0.28 | 6.92 | 27.31 | 14 | -- | -- |
| 75.67 | 0.405 | 10.6 | -1.1 | -- | 0.4 | -- | 1.66 | -0.272 | -- | -0.002666 | 9 | -- | -- |
| 56.91 | 0.354 | 10.6 | -1.08 | 0.733 | -- | 0.658 | -- | -0.278 | 7.71 | -- | -- | -- | -- |
| 57.92 | 0.356 | 10.6 | -1.06 | 0.741 | -- | -- | -- | -0.281 | 7.4 | -- | -- | -- | -- |
| 82.23 | 0.422 | 10.6 | -1.05 | -- | 0.388 | -- | -- | -0.267 | -- | -7.583 | 10 | -- | -- |
| 85.33 | 0.433 | 10.6 | -- | 0.712 | 0.449 | -- | -- | -0.156 | 7.11 | 38.98 | 6 | -- | -- |
| 87.17 | 0.436 | 10.6 | -1.05 | -- | -- | -- | -- | -0.268 | -- | -- | -- | -- | -- |
| 87.64 | 0.438 | 10.6 | -- | 0.732 | -- | -- | -- | -0.162 | 7.5 | -- | -- | -- | -- |
| 111.15 | 0.491 | 10.6 | -- | -- | 0.396 | -- | -- | -0.149 | -- | -31.04 | 7 | -- | -- |
| 116.25 | 0.503 | 10.6 | -- | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.85 | radiation | 1.0 | 270 | > th | dose independent | sin | 22 | NA |
| 2 | 46.87 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 13 | 46.90 | radiation | 1.0 | 90 | > th | dose independent | sin | 18 | NA |
| 17 | 47.02 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 21 |
| 33 | 47.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 52 | 47.83 | temperature | 25.0 | 90 | > th | dose independent | rect. | 11 | 9 |
| 54 | 47.86 | radiation | 1.0 | 90 | < th | dose dependent | sin | 17 | NA |
| 55 | 47.88 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 18 |
| 69 | 48.12 | radiation | 1.0 | 90 | < th | dose independent | sin | 17 | NA |
| 81 | 48.17 | humidity | 60.0 | 270 | > th | dose independent | rect. | 16 | 18 |
| 87 | 48.28 | temperature | 15.0 | 10 | > th | dose dependent | sin | 17 | NA |
| 96 | 48.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 7 |
| 101 | 48.40 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 5 | 8 |
| 126 | 48.49 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 7 | 6 |
| 129 | 48.52 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 17 |
| 130 | 48.53 | radiation | 1.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 175 | 48.63 | temperature | 25.0 | 90 | > th | dose independent | sin | 20 | NA |
| 302 | 49.03 | radiation | 1.0 | 270 | < th | dose independent | sin | 20 | NA |
| 303 | 49.03 | temperature | 25.0 | 90 | > th | dose independent | rect. | 24 | 19 |
| 309 | 49.05 | humidity | 80.0 | 270 | < th | dose independent | rect. | 10 | 7 |
| 396 | 49.17 | radiation | 1.0 | 10 | > th | dose dependent | sin | 3 | NA |
| 409 | 49.20 | humidity | 70.0 | 10 | > th | dose independent | sin | 14 | NA |
| 457 | 49.28 | radiation | 30.0 | 90 | < th | dose independent | sin | 8 | NA |
| 483 | 49.32 | radiation | 40.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 560 | 49.38 | radiation | 10.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 562 | 49.38 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 563 | 49.38 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 582 | 49.40 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 9 |
| 604 | 49.42 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 614 | 49.44 | temperature | 25.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 621 | 49.45 | radiation | 40.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 652 | 49.47 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 11 | 19 |
| 658 | 49.49 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 17 |
| 665 | 49.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 7 |
| 668 | 49.50 | temperature | 25.0 | 90 | < th | dose independent | rect. | 13 | 22 |
| 673 | 49.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 7 |
| 698 | 49.53 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 702 | 49.54 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 7 |
| 704 | 49.54 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 7 |
| 705 | 49.54 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 17 |
| 709 | 49.54 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 716 | 49.55 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 734 | 49.58 | radiation | 1.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 752 | 49.59 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 10 | 6 |
| 762 | 49.59 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 10 | 10 |
| 815 | 49.63 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 879 | 49.67 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 7 |
| 919 | 49.70 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 936 | 49.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 7 |
| 956 | 49.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 17 |
| 963 | 49.74 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 968 | 49.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 17 |
| 976 | 49.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 17 |
| 980 | 49.76 | radiation | 20.0 | 90 | < th | dose independent | rect. | 23 | 12 |
| 981 | 49.76 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 14 |
