Os05g0454500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0454500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 210.5 | 0.682 | 9.15 | -2.11 | 6.29 | 6.55 | -0.882 | -2.53 | 0.13 | 15.3 | 0.9898 | 715 | 9.98 | 15.9 |
| 210.65 | 0.676 | 9.16 | -2.17 | 6.37 | 6.67 | 1.07 | -- | 0.101 | 15.3 | 0.842 | 715 | 9.94 | 15.8 |
| 210.55 | 0.676 | 9.15 | -2.14 | 6.37 | 6.64 | -- | -1.45 | 0.119 | 15.3 | 0.99 | 714 | 10 | 15.9 |
| 214.08 | 0.681 | 9.15 | -2.15 | 6.43 | 6.72 | -- | -- | 0.11 | 15.3 | 0.8454 | 715 | 9.95 | 15.8 |
| 382.32 | 0.916 | 9.17 | -2.52 | -- | -0.442 | -- | -0.562 | -0.117 | -- | 0.62 | 1377 | 10.6 | 16.1 |
| 279.65 | 0.784 | 9.16 | -2.5 | 1.41 | -- | 1.11 | -- | -0.0716 | 14 | -- | -- | -- | -- |
| 284.37 | 0.79 | 9.16 | -2.47 | 1.41 | -- | -- | -- | -0.065 | 14 | -- | -- | -- | -- |
| 342.98 | 0.863 | 9.15 | -2.45 | -- | 1.88 | -- | -- | -0.153 | -- | 1.84 | 1375 | 10.6 | 16.2 |
| 321.23 | 0.835 | 9.11 | -- | 6.88 | 7.38 | -- | -- | 0.339 | 15.2 | 0.5496 | 727 | 8.25 | 17 |
| 404.62 | 0.94 | 9.17 | -2.53 | -- | -- | -- | -- | -0.098 | -- | -- | -- | -- | -- |
| 445.07 | 0.987 | 9.09 | -- | 1.46 | -- | -- | -- | 0.21 | 14 | -- | -- | -- | -- |
| 408.7 | 0.942 | 9.2 | -- | -- | 3.43 | -- | -- | 0.195 | -- | 0.04002 | 1353 | 11.6 | 19.1 |
| 573.19 | 1.12 | 9.11 | -- | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 211.59 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 16 |
| 5 | 212.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 19 | 215.81 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 30 | 216.03 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 8 |
| 49 | 216.66 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 9 |
| 50 | 216.78 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 4 |
| 69 | 218.61 | radiation | 1 | 720 | < th | dose independent | sin | 19 | NA |
| 94 | 221.05 | radiation | 1 | 720 | < th | dose dependent | sin | 19 | NA |
| 107 | 221.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 108 | 221.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 143 | 222.96 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 153 | 222.96 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 163 | 223.08 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 164 | 223.08 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 181 | 224.28 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 185 | 224.48 | radiation | 1 | 720 | > th | dose independent | sin | 20 | NA |
| 192 | 225.03 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 194 | 225.03 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 196 | 225.03 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 247 | 225.03 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 249 | 225.03 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 251 | 225.03 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 302 | 225.05 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 306 | 225.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 307 | 225.54 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 309 | 225.66 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 319 | 226.32 | wind | 5 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 323 | 226.47 | wind | 5 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 325 | 226.48 | radiation | 10 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 328 | 226.56 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 349 | 227.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 354 | 227.40 | humidity | 80 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 355 | 227.40 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 399 | 228.29 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 404 | 228.44 | humidity | 80 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 407 | 228.47 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 408 | 228.51 | wind | 5 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 411 | 228.54 | humidity | 60 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 420 | 228.69 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 423 | 228.73 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 471 | 229.32 | wind | 5 | 4320 | > th | dose independent | rect. | 15 | 7 |
| 513 | 229.91 | radiation | 10 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 535 | 230.44 | radiation | 10 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 541 | 230.55 | wind | 3 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 569 | 231.02 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 575 | 231.07 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 581 | 231.10 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 597 | 231.24 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 11 |
| 611 | 231.40 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 624 | 231.51 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 630 | 231.62 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 2 | 9 |
| 639 | 231.71 | radiation | 10 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 680 | 232.03 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 681 | 232.05 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 2 | 9 |
| 699 | 232.19 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 5 |
| 730 | 232.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 732 | 232.26 | wind | 9 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 734 | 232.27 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 7 |
| 746 | 232.36 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 756 | 232.41 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 800 | 232.69 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 5 | 6 |
| 801 | 232.69 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 5 | 6 |
| 812 | 232.76 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 822 | 232.81 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 824 | 232.82 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 832 | 232.86 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 867 | 233.00 | humidity | 80 | 14400 | > th | dose independent | rect. | 20 | 11 |