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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0454200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pollen-specific kinase partner protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0234) R2 : 0.00138
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0391 (0.0492) R2dN8 : 0.00178 R2N8 : 0.00138
σ : 0.44
deviance : 89.02
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.24 0.423 2.24 -1.58 0.104 -92.7 -0.255 -198 0.0651 4.99 15 722 -- --
85.32 0.434 3.05 0.0611 0.114 1.26 -0.0903 -- 0.0506 6.81 15 722 -- --
81.32 0.42 2.24 -1.57 0.11 -92.7 -- -198 0.0672 6.25 14.99 726 -- --
81.74 0.421 3.04 0.128 0.112 1.42 -- -- 0.0704 6.47 16.19 411 -- --
81.95 0.422 2.24 -1.57 -- -92.8 -- -199 0.0678 -- 14.98 744 -- --
88.34 0.441 3.05 0.0111 0.106 -- -0.214 -- 0.0371 5.26 -- -- -- --
88.39 0.44 3.05 0.0116 0.11 -- -- -- 0.0384 6.33 -- -- -- --
82.35 0.423 3.04 0.131 -- 1.44 -- -- 0.0724 -- 16.2 405 -- --
81.84 0.421 3.04 -- 0.109 1.28 -- -- 0.0546 6.23 17.18 170 -- --
89.02 0.441 3.05 0.0145 -- -- -- -- 0.0407 -- -- -- -- --
88.4 0.44 3.05 -- 0.11 -- -- -- 0.0371 6.33 -- -- -- --
82.47 0.423 3.05 -- -- 1.29 -- -- 0.0554 -- 17.1 159 -- --
89.02 0.44 3.05 -- -- -- -- -- 0.0391 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 74.36 temperature 15.0 30 > th dose independent rect. 3 23
3 74.93 wind 3.0 30 < th dose dependent rect. 2 1
6 74.96 atmosphere 1005.0 30 > th dose dependent rect. 2 1
7 74.97 wind 3.0 30 < th dose independent rect. 2 1
9 74.97 temperature 10.0 30 > th dose dependent rect. 2 1
11 74.98 temperature 25.0 30 < th dose independent rect. 2 1
14 74.99 humidity 80.0 30 > th dose independent rect. 2 1
18 75.00 temperature 10.0 30 > th dose independent rect. 2 1
21 75.00 humidity 50.0 30 > th dose independent rect. 2 1
24 75.00 atmosphere 995.0 30 > th dose independent rect. 2 1
25 75.00 atmosphere 1010.0 30 < th dose independent rect. 2 1
27 75.00 radiation 1.0 30 < th dose independent rect. 2 1
32 75.00 precipitation 0.1 30 < th dose independent rect. 2 1
34 75.00 humidity 50.0 30 > th dose dependent rect. 2 1
36 75.00 radiation 1.0 30 < th dose dependent rect. 2 1
41 75.00 precipitation 0.1 30 < th dose dependent rect. 2 1
44 75.02 atmosphere 995.0 30 > th dose dependent rect. 2 1
47 75.07 atmosphere 1005.0 30 > th dose independent rect. 2 1
50 75.11 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 75.21 temperature 30.0 30 < th dose dependent rect. 2 1
59 75.69 wind 1.0 30 > th dose independent rect. 2 1
102 76.25 wind 9.0 30 < th dose independent rect. 3 23
106 76.78 atmosphere 1015.0 1440 < th dose independent rect. 3 1
109 77.21 temperature 15.0 1440 > th dose independent rect. 3 1
110 77.96 humidity 50.0 43200 > th dose independent rect. 3 1
114 79.02 temperature 15.0 720 > th dose independent rect. 7 8
115 79.22 atmosphere 995.0 30 > th dose independent rect. 3 23
118 79.48 precipitation 0.1 30 < th dose independent rect. 3 23
119 79.48 precipitation 0.1 30 < th dose dependent rect. 3 23
120 79.54 temperature 15.0 720 > th dose independent rect. 3 16
121 79.60 temperature 15.0 720 > th dose independent rect. 11 16
125 79.72 temperature 10.0 30 > th dose dependent rect. 3 23
127 79.87 temperature 15.0 1440 > th dose independent rect. 8 20
128 79.94 temperature 15.0 1440 > th dose independent rect. 21 7
130 80.01 atmosphere 1010.0 30 < th dose independent rect. 3 23
132 80.07 temperature 15.0 720 > th dose independent rect. 23 16
135 80.12 temperature 15.0 1440 > th dose independent rect. 8 5
143 80.30 temperature 15.0 1440 > th dose independent rect. 10 18
147 80.36 temperature 15.0 720 > th dose independent rect. 15 16
154 80.47 temperature 15.0 720 > th dose independent rect. 3 8
156 80.49 temperature 15.0 1440 > th dose independent rect. 5 3
157 80.50 temperature 15.0 1440 > th dose independent rect. 11 2
160 80.52 temperature 15.0 720 > th dose independent rect. 3 21
163 80.59 temperature 15.0 1440 > th dose independent rect. 16 12
168 80.70 temperature 15.0 1440 > th dose independent rect. 21 16
188 80.86 humidity 70.0 43200 > th dose independent rect. 3 1
192 80.87 atmosphere 1015.0 1440 < th dose independent rect. 1 7
194 80.88 radiation 1.0 1440 > th dose independent rect. 8 1
195 80.88 radiation 1.0 1440 > th dose independent rect. 8 5
199 80.89 temperature 15.0 720 > th dose independent rect. 16 23
201 80.91 temperature 15.0 720 > th dose independent rect. 3 12
203 80.91 temperature 15.0 1440 > th dose independent rect. 21 20
216 80.96 temperature 15.0 1440 > th dose independent rect. 5 5
220 80.98 temperature 15.0 270 > th dose independent sin 23 NA
221 80.98 temperature 15.0 90 > th dose independent sin 6 NA
223 80.98 temperature 15.0 720 > th dose independent rect. 5 16
230 81.01 atmosphere 1015.0 720 < th dose independent rect. 3 8
238 81.04 temperature 15.0 90 > th dose independent sin 8 NA
239 81.04 temperature 15.0 90 > th dose independent sin 20 NA
240 81.04 temperature 15.0 1440 > th dose independent rect. 8 2
244 81.05 temperature 15.0 1440 > th dose independent rect. 3 14
257 81.09 temperature 15.0 1440 > th dose independent sin 21 NA
277 81.13 atmosphere 1015.0 1440 < th dose independent rect. 24 10
287 81.16 temperature 15.0 720 > th dose independent sin 14 NA
297 81.19 precipitation 0.1 1440 < th dose independent rect. 5 8
300 81.19 precipitation 0.1 1440 < th dose dependent rect. 5 8
313 81.21 humidity 90.0 720 < th dose independent rect. 8 7
327 81.24 temperature 15.0 720 < th dose independent sin 14 NA
329 81.24 temperature 15.0 720 < th dose independent rect. 17 11
335 81.24 temperature 15.0 720 < th dose independent rect. 10 17
337 81.24 temperature 15.0 720 < th dose independent rect. 6 20
338 81.24 temperature 15.0 720 < th dose dependent sin 21 NA
339 81.24 temperature 15.0 720 < th dose dependent no NA NA
340 81.24 temperature 15.0 720 < th dose dependent rect. 22 6
341 81.24 temperature 15.0 720 < th dose dependent rect. 21 8
342 81.24 temperature 15.0 720 < th dose dependent rect. 20 10
343 81.24 temperature 15.0 720 < th dose dependent rect. 19 15
344 81.24 temperature 15.0 720 < th dose dependent rect. 18 17
354 81.24 temperature 15.0 720 < th dose dependent rect. 9 21
368 81.24 temperature 15.0 720 < th dose dependent rect. 1 23
369 81.24 temperature 15.0 720 < th dose dependent rect. 5 23
380 81.24 temperature 15.0 720 < th dose dependent rect. 21 23
383 81.25 temperature 15.0 720 < th dose independent sin 20 NA
386 81.25 precipitation 0.1 1440 > th dose independent rect. 9 1
387 81.25 temperature 15.0 720 < th dose independent rect. 22 4
389 81.25 temperature 15.0 720 < th dose independent rect. 19 8
393 81.25 temperature 15.0 720 < th dose independent rect. 13 16
404 81.25 temperature 15.0 720 < th dose dependent sin 11 NA
405 81.25 precipitation 0.1 1440 > th dose dependent rect. 9 1
406 81.25 humidity 90.0 1440 > th dose dependent rect. 11 2
415 81.25 temperature 15.0 720 < th dose dependent rect. 3 23
419 81.26 temperature 15.0 1440 < th dose independent no NA NA
420 81.26 wind 7.0 1440 > th dose independent rect. 7 1
421 81.26 radiation 1.0 1440 < th dose independent rect. 9 1
430 81.26 temperature 15.0 1440 < th dose independent rect. 18 13
441 81.26 temperature 15.0 1440 < th dose independent rect. 3 19
447 81.26 temperature 15.0 1440 < th dose independent rect. 18 20
453 81.26 temperature 15.0 1440 < th dose independent rect. 9 22
476 81.26 temperature 15.0 1440 < th dose dependent sin 8 NA
479 81.26 temperature 15.0 1440 < th dose dependent sin 0 NA
480 81.26 radiation 1.0 1440 < th dose dependent rect. 9 1
482 81.26 temperature 15.0 1440 < th dose dependent rect. 22 12
488 81.26 temperature 15.0 1440 < th dose dependent rect. 3 17
491 81.26 temperature 15.0 1440 < th dose dependent rect. 1 19
494 81.26 temperature 15.0 720 < th dose dependent rect. 3 20
505 81.27 temperature 15.0 1440 < th dose independent sin 11 NA
517 81.27 temperature 15.0 720 < th dose independent rect. 9 15
520 81.27 temperature 15.0 1440 < th dose independent rect. 4 16
572 81.27 temperature 20.0 720 < th dose dependent rect. 10 6
574 81.27 temperature 15.0 1440 < th dose dependent rect. 4 15
597 81.28 temperature 15.0 90 > th dose independent no NA NA
599 81.28 temperature 15.0 90 < th dose independent sin 7 NA
649 81.28 temperature 15.0 90 < th dose independent no NA NA
651 81.28 temperature 15.0 1440 < th dose independent rect. 5 1
653 81.28 temperature 15.0 1440 < th dose independent rect. 9 1
656 81.28 atmosphere 1015.0 1440 > th dose independent rect. 1 1
796 81.28 temperature 15.0 270 < th dose independent rect. 24 10