Os05g0453100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os05g0453100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.62 | 0.507 | 8.22 | 1.31 | 0.948 | 1.49 | -0.86 | -2.87 | 0.205 | 0.086 | 19.28 | 2794 | -- | -- |
| 124.45 | 0.52 | 8.13 | 2.05 | 0.968 | 1.64 | -1.12 | -- | 0.305 | 0.271 | 16.74 | 2794 | -- | -- |
| 119.58 | 0.509 | 8.23 | 1.24 | 0.958 | 1.5 | -- | -3.14 | 0.182 | 0.136 | 19.9 | 2741 | -- | -- |
| 127.05 | 0.525 | 8.1 | 2.17 | 0.951 | 1.6 | -- | -- | 0.431 | 0.0354 | 15.9 | 2746 | -- | -- |
| 166.88 | 0.602 | 8.22 | 1.16 | -- | 1.79 | -- | -3.55 | 0.146 | -- | 19.98 | 2452 | -- | -- |
| 179.11 | 0.627 | 8.03 | 2.77 | 1.07 | -- | -0.891 | -- | 0.764 | 0.31 | -- | -- | -- | -- |
| 182.53 | 0.633 | 8.03 | 2.81 | 1.08 | -- | -- | -- | 0.768 | 0.351 | -- | -- | -- | -- |
| 161.31 | 0.592 | 8.1 | 2.17 | -- | 2.2 | -- | -- | 0.387 | -- | 16.37 | 988 | -- | -- |
| 166.19 | 0.6 | 8.26 | -- | 1.03 | 2.41 | -- | -- | -0.263 | 0.315 | 7.486 | 47520 | -- | -- |
| 255.59 | 0.747 | 8.01 | 2.84 | -- | -- | -- | -- | 0.785 | -- | -- | -- | -- | -- |
| 390.01 | 0.924 | 8.1 | -- | 1.12 | -- | -- | -- | 0.455 | 0.482 | -- | -- | -- | -- |
| 232.55 | 0.71 | 8.25 | -- | -- | 2.47 | -- | -- | -0.27 | -- | 6.712 | 47520 | -- | -- |
| 468.64 | 1.01 | 8.08 | -- | -- | -- | -- | -- | 0.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.34 | radiation | 40 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 2 | 112.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 3 | 113.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 4 | 113.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 6 | 113.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 3 |
| 7 | 113.32 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 37 | 114.09 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 56 | 114.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 82 | 115.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 90 | 115.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 115 | 116.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 204 | 117.41 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 206 | 117.47 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 218 | 117.65 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 239 | 117.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 279 | 118.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 315 | 118.25 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 331 | 118.31 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 348 | 118.38 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 386 | 118.53 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 13 |
| 401 | 118.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 407 | 118.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 13 |
| 411 | 118.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 414 | 118.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 429 | 118.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 441 | 118.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 442 | 118.67 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 456 | 118.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 477 | 118.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 494 | 118.77 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 522 | 118.85 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 532 | 118.87 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 606 | 119.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 8 |
| 637 | 119.15 | temperature | 25 | 4320 | < th | dose independent | sin | 23 | NA |
| 667 | 119.22 | temperature | 25 | 4320 | > th | dose independent | sin | 23 | NA |
| 688 | 119.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 693 | 119.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 9 |
| 734 | 119.36 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 862 | 119.62 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 12 |
| 900 | 119.67 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 9 |
| 944 | 119.74 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 997 | 119.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |