Os05g0450300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0450300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.51 | 0.604 | 3.48 | 0.585 | 0.221 | 17.8 | -1.65 | 41.3 | -0.0852 | 3.61 | 1.642 | 926 | 13.8 | 1.07 |
| 286.65 | 0.795 | 3.17 | -0.724 | 0.285 | -0.0482 | -1.61 | -- | -0.21 | 2.1 | 1.939 | 311 | 13.8 | 1.63 |
| 173.38 | 0.613 | 3.48 | 0.616 | 0.216 | 17.8 | -- | 41.3 | -0.0747 | 2.35 | 1.622 | 926 | 13.8 | 1.1 |
| 257.13 | 0.747 | 3.11 | -0.716 | 0.14 | 1.09 | -- | -- | -0.0174 | 0.963 | 15.69 | 921 | 14 | 0.981 |
| 175.99 | 0.618 | 3.47 | 0.617 | -- | 17.8 | -- | 41 | -0.0691 | -- | 1.627 | 926 | 13.8 | 1.1 |
| 286.65 | 0.794 | 3.17 | -0.723 | 0.286 | -- | -1.61 | -- | -0.209 | 2.1 | -- | -- | -- | -- |
| 295.99 | 0.806 | 3.17 | -0.675 | 0.292 | -- | -- | -- | -0.199 | 0.816 | -- | -- | -- | -- |
| 200.75 | 0.66 | 3.13 | -0.264 | -- | 3.76 | -- | -- | -0.0755 | -- | 2.056 | 907 | 14.2 | 0.917 |
| 209.95 | 0.675 | 3.12 | -- | 0.265 | 2.82 | -- | -- | 0.0935 | 0.744 | 1.209e-05 | 1042 | 14.2 | 0.417 |
| 301.3 | 0.811 | 3.16 | -0.664 | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
| 307.98 | 0.821 | 3.15 | -- | 0.281 | -- | -- | -- | -0.124 | 0.708 | -- | -- | -- | -- |
| 196.52 | 0.653 | 3.12 | -- | -- | 3.68 | -- | -- | -0.0301 | -- | 0.3637 | 912 | 14.5 | 0.615 |
| 312.93 | 0.826 | 3.15 | -- | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 204.70 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 1 |
| 2 | 204.70 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 3 | 206.22 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 4 | 206.22 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 5 | 206.42 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 17 | 206.97 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 72 | 218.80 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 79 | 219.83 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 90 | 223.17 | wind | 7.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 92 | 224.13 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 102 | 224.13 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 113 | 225.71 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 118 | 226.19 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 138 | 228.33 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 141 | 228.59 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 144 | 228.89 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 2 | 2 |
| 150 | 228.90 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 1 |
| 166 | 231.06 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 167 | 231.97 | wind | 5.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 168 | 231.99 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 14 |
| 169 | 232.09 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 12 |
| 175 | 232.95 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 188 | 234.28 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 5 |
| 202 | 235.31 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 214 | 236.59 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 230 | 237.38 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 19 | 4 |
| 239 | 237.89 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 243 | 238.17 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 253 | 238.38 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 18 |
| 256 | 238.48 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 262 | 238.61 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 8 |
| 287 | 239.35 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 2 |
| 297 | 239.68 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 346 | 240.58 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 458 | 241.86 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 463 | 241.90 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 477 | 242.25 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 17 | 6 |
| 481 | 242.29 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 3 |
| 514 | 242.89 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 516 | 242.90 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 564 | 243.30 | radiation | 1.0 | 720 | < th | dose independent | sin | 18 | NA |
| 570 | 243.37 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 574 | 243.40 | radiation | 10.0 | 720 | < th | dose dependent | sin | 16 | NA |
| 644 | 244.48 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 646 | 244.50 | temperature | 20.0 | 30 | > th | dose independent | rect. | 1 | 3 |
| 660 | 244.79 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 668 | 245.02 | wind | 1.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 674 | 245.08 | radiation | 1.0 | 720 | > th | dose independent | sin | 19 | NA |
| 679 | 245.15 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 22 | 7 |
| 683 | 245.22 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 19 | 10 |
| 686 | 245.27 | wind | 5.0 | 720 | > th | dose independent | rect. | 16 | 7 |
| 706 | 245.44 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 723 | 245.52 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 748 | 245.82 | humidity | 90.0 | 270 | > th | dose dependent | sin | 17 | NA |
| 754 | 245.90 | wind | 5.0 | 720 | < th | dose independent | rect. | 17 | 7 |
| 755 | 245.90 | wind | 5.0 | 720 | < th | dose independent | rect. | 15 | 9 |
| 825 | 246.72 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 867 | 247.10 | wind | 7.0 | 720 | > th | dose independent | rect. | 16 | 10 |
| 893 | 247.34 | radiation | 1.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 908 | 247.49 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 919 | 247.55 | wind | 3.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 946 | 247.83 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 18 | 10 |
| 951 | 247.88 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 958 | 247.96 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 960 | 247.96 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 963 | 247.96 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |