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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0446000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcriptional activator DEMETER (DNA glycosylase-related protein DME).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.04 (0.0287) R2 : 0.532
β1 : 0.753 (0.105) R2dD : 0.0545 R2D : 0.0268
β2 : 1.59 (0.0737) R2dC : 0.476 R2C : 0.453
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.333 (0.0614) R2dN8 : 0.0404 R2N8 : 0.00835
σ : 0.541
deviance : 133.26
__
_____
C
peak time of C : 16.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
109.17 0.491 4.24 1.51 1.57 16.9 1.5 30.4 0.408 16.4 15.05 5318 -- --
123.33 0.521 4.04 0.803 1.59 1.58 1.24 -- 0.342 16.4 15.05 5318 -- --
115.19 0.5 4.23 1.49 1.58 17 -- 30.8 0.411 16.4 15.01 5220 -- --
115.13 0.5 4.03 1.06 1.57 2.04 -- -- 0.406 16.4 15.15 5992 -- --
248.3 0.734 4.23 1.48 -- 17.6 -- 31.7 0.378 -- 15.04 5300 -- --
128.14 0.531 4.05 0.742 1.58 -- 1.37 -- 0.325 16.4 -- -- -- --
133.26 0.541 4.04 0.753 1.59 -- -- -- 0.333 16.4 -- -- -- --
247.88 0.733 4.01 1.05 -- 2.08 -- -- 0.387 -- 14.94 6932 -- --
138.07 0.547 4.06 -- 1.56 1.52 -- -- 0.269 16.4 12.18 5238 -- --
268.53 0.766 4.03 0.691 -- -- -- -- 0.291 -- -- -- -- --
148.22 0.57 4.06 -- 1.57 -- -- -- 0.249 16.4 -- -- -- --
269.02 0.764 4.04 -- -- 1.83 -- -- 0.235 -- 13.2 5224 -- --
281.12 0.783 4.05 -- -- -- -- -- 0.214 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.24 temperature 15.0 270 > th dose independent rect. 24 23
2 104.07 temperature 15.0 1440 > th dose independent rect. 24 5
4 104.52 humidity 50.0 43200 > th dose independent rect. 24 5
5 105.15 atmosphere 1015.0 4320 < th dose independent rect. 15 1
9 105.81 atmosphere 1015.0 1440 < th dose independent rect. 24 5
11 105.89 radiation 30.0 4320 < th dose independent rect. 24 7
13 106.05 temperature 15.0 90 > th dose independent rect. 15 23
16 106.15 atmosphere 1015.0 4320 < th dose independent rect. 15 3
17 106.30 temperature 15.0 1440 > th dose independent rect. 24 18
19 106.52 atmosphere 1015.0 1440 < th dose independent rect. 24 8
25 106.76 temperature 15.0 1440 > th dose independent rect. 3 1
26 106.87 temperature 15.0 270 > th dose independent rect. 15 20
31 107.03 atmosphere 1015.0 1440 < th dose independent rect. 3 1
37 107.26 temperature 15.0 90 > th dose independent rect. 3 23
45 107.66 precipitation 0.1 1440 < th dose independent rect. 8 3
46 107.66 precipitation 0.1 1440 < th dose dependent rect. 8 3
48 107.74 humidity 50.0 43200 > th dose independent rect. 3 1
49 107.74 wind 9.0 1440 > th dose dependent rect. 11 1
51 107.77 radiation 1.0 720 < th dose independent rect. 8 6
52 107.77 radiation 1.0 720 < th dose dependent rect. 8 6
55 107.90 humidity 50.0 43200 > th dose independent rect. 2 3
59 107.97 radiation 1.0 720 < th dose independent rect. 9 4
61 107.97 radiation 1.0 720 < th dose dependent rect. 9 4
66 108.04 temperature 15.0 4320 > th dose independent rect. 14 4
74 108.21 temperature 15.0 1440 > th dose independent rect. 2 16
90 108.39 wind 9.0 1440 < th dose independent rect. 11 1
93 108.43 precipitation 0.1 1440 < th dose independent rect. 6 5
95 108.43 precipitation 0.1 1440 < th dose dependent rect. 6 5
100 108.49 radiation 10.0 30 < th dose dependent rect. 7 16
107 108.57 temperature 15.0 1440 > th dose independent rect. 15 14
108 108.60 atmosphere 995.0 30 > th dose dependent rect. 23 18
109 108.63 temperature 15.0 4320 > th dose independent rect. 11 8
110 108.64 temperature 15.0 1440 > th dose independent rect. 24 13
115 108.73 wind 9.0 1440 > th dose independent rect. 11 1
120 108.76 precipitation 0.1 720 > th dose dependent rect. 7 7
128 108.80 humidity 70.0 43200 > th dose independent rect. 3 1
130 108.82 radiation 20.0 4320 < th dose independent rect. 18 12
132 108.82 temperature 20.0 10 < th dose dependent rect. 23 20
137 108.85 radiation 1.0 1440 < th dose independent rect. 9 2
138 108.85 radiation 1.0 1440 < th dose dependent rect. 9 2
149 108.90 precipitation 0.1 720 > th dose independent rect. 7 7
154 108.92 temperature 20.0 720 < th dose dependent rect. 8 7
155 108.92 radiation 20.0 90 < th dose dependent rect. 12 11
162 108.97 precipitation 0.1 720 > th dose independent rect. 9 5
181 109.01 temperature 20.0 720 < th dose dependent rect. 7 9
186 109.05 temperature 20.0 10 < th dose dependent rect. 3 21
188 109.06 temperature 30.0 10 < th dose dependent rect. 23 18
195 109.10 humidity 50.0 14400 > th dose independent rect. 19 5
197 109.10 precipitation 0.1 720 > th dose dependent rect. 9 5
210 109.14 temperature 15.0 1440 > th dose independent rect. 8 3
240 109.24 atmosphere 1015.0 1440 > th dose independent rect. 23 5
264 109.30 temperature 15.0 90 > th dose independent rect. 17 18
265 109.30 atmosphere 1015.0 4320 > th dose dependent rect. 14 6
273 109.33 atmosphere 1010.0 270 < th dose independent rect. 16 18
276 109.34 atmosphere 1015.0 1440 > th dose dependent rect. 23 5
285 109.35 temperature 15.0 270 > th dose independent rect. 4 17
307 109.44 temperature 15.0 4320 < th dose dependent rect. 24 18
317 109.47 precipitation 0.1 1440 > th dose independent rect. 8 3
321 109.47 precipitation 0.1 1440 > th dose dependent rect. 8 3
323 109.47 wind 9.0 1440 > th dose dependent rect. 21 15
325 109.48 humidity 50.0 43200 < th dose dependent rect. 5 1
334 109.50 temperature 15.0 1440 > th dose independent rect. 4 7
337 109.50 temperature 20.0 10 < th dose dependent rect. 23 15
343 109.51 wind 9.0 1440 > th dose dependent rect. 9 3
352 109.52 precipitation 0.1 1440 > th dose independent rect. 10 1
355 109.52 precipitation 0.1 1440 > th dose dependent rect. 10 1
364 109.53 temperature 15.0 1440 > th dose independent rect. 4 9
366 109.53 temperature 15.0 4320 < th dose dependent rect. 1 2
386 109.55 atmosphere 1010.0 270 < th dose independent rect. 15 20
397 109.58 atmosphere 1015.0 4320 > th dose independent rect. 18 1
403 109.58 atmosphere 1015.0 4320 > th dose dependent rect. 18 1
411 109.59 temperature 15.0 4320 < th dose dependent sin 3 NA
421 109.61 temperature 15.0 1440 > th dose independent sin 8 NA
422 109.61 temperature 15.0 1440 < th dose independent rect. 24 1
423 109.61 temperature 15.0 1440 < th dose independent rect. 24 14
428 109.61 temperature 20.0 720 < th dose dependent rect. 11 2
443 109.62 temperature 15.0 1440 < th dose independent rect. 23 11
452 109.62 temperature 15.0 4320 < th dose dependent sin 8 NA
457 109.63 temperature 15.0 1440 < th dose independent sin 5 NA
459 109.63 temperature 15.0 1440 < th dose independent rect. 23 8
463 109.63 temperature 15.0 1440 > th dose independent rect. 11 18
465 109.63 temperature 15.0 1440 > th dose independent rect. 11 21
479 109.64 temperature 15.0 4320 < th dose independent rect. 5 1
482 109.64 temperature 15.0 1440 < th dose independent rect. 3 3
485 109.64 temperature 15.0 1440 < th dose independent rect. 23 5
494 109.64 temperature 15.0 1440 < th dose dependent rect. 4 2
498 109.64 temperature 15.0 4320 < th dose dependent rect. 23 5
510 109.65 temperature 15.0 1440 < th dose independent rect. 2 8
524 109.65 temperature 15.0 1440 < th dose dependent rect. 2 5
525 109.65 temperature 15.0 4320 < th dose dependent rect. 6 5
539 109.66 precipitation 0.1 1440 > th dose independent rect. 6 1
543 109.66 temperature 15.0 1440 < th dose independent rect. 2 5
545 109.66 temperature 20.0 720 < th dose independent rect. 10 5
553 109.66 precipitation 0.1 1440 > th dose dependent rect. 6 1
562 109.66 temperature 15.0 4320 < th dose dependent rect. 21 9
563 109.66 temperature 15.0 1440 < th dose dependent rect. 1 10
575 109.66 temperature 20.0 270 < th dose dependent rect. 8 14
587 109.67 atmosphere 1010.0 270 < th dose independent rect. 15 7
640 109.69 temperature 20.0 10 < th dose dependent rect. 11 18
648 109.70 temperature 15.0 720 < th dose independent rect. 4 14
681 109.71 temperature 15.0 720 < th dose dependent rect. 4 14
693 109.72 precipitation 0.1 1440 > th dose independent rect. 6 5
703 109.72 precipitation 0.1 1440 > th dose dependent rect. 6 5
736 109.74 temperature 15.0 270 > th dose independent rect. 6 14
747 109.74 temperature 20.0 10 < th dose dependent rect. 6 23
828 109.79 temperature 20.0 720 < th dose independent rect. 11 2
870 109.82 temperature 20.0 720 < th dose dependent sin 0 NA
895 109.83 temperature 20.0 10 < th dose dependent sin 5 NA
910 109.84 temperature 15.0 4320 < th dose independent rect. 22 1
950 109.85 temperature 20.0 10 < th dose dependent rect. 20 22