Os05g0445100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome P450 family protein.
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Os05g0445100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome P450 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.96 | 0.481 | 5.86 | -0.584 | 1.32 | -1.35 | -0.475 | -4.29 | 0.197 | 11.1 | 0.9402 | 4279 | -- | -- |
| 117.33 | 0.504 | 5.81 | -0.346 | 1.24 | -1.18 | -0.462 | -- | 0.369 | 11.1 | 3.96 | 7041 | -- | -- |
| 105.59 | 0.479 | 5.86 | -0.587 | 1.33 | -1.34 | -- | -4.22 | 0.2 | 11 | 1.057 | 4276 | -- | -- |
| 107.6 | 0.483 | 5.73 | 0.163 | 1.21 | -1.37 | -- | -- | 0.556 | 11.5 | 2.517 | 8408 | -- | -- |
| 153.47 | 0.58 | 5.86 | 0.106 | -- | 1.04 | -- | -0.46 | 0.0725 | -- | 3.805 | 6889 | -- | -- |
| 143.57 | 0.562 | 5.81 | 0.0957 | 1.44 | -- | -0.146 | -- | 0.173 | 11.2 | -- | -- | -- | -- |
| 143.66 | 0.561 | 5.81 | 0.0897 | 1.44 | -- | -- | -- | 0.173 | 11.2 | -- | -- | -- | -- |
| 154.84 | 0.582 | 5.86 | 0.102 | -- | 1.03 | -- | -- | 0.0737 | -- | 3.805 | 6889 | -- | -- |
| 108.05 | 0.484 | 5.73 | -- | 1.21 | -1.35 | -- | -- | 0.551 | 11.3 | 2.52 | 8449 | -- | -- |
| 273.52 | 0.773 | 5.84 | 0.0552 | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
| 143.87 | 0.561 | 5.81 | -- | 1.44 | -- | -- | -- | 0.163 | 11.2 | -- | -- | -- | -- |
| 155.11 | 0.582 | 5.86 | -- | -- | 1.03 | -- | -- | 0.0625 | -- | 3.805 | 6889 | -- | -- |
| 273.6 | 0.772 | 5.84 | -- | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.80 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 11 | 97.81 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 17 | 97.85 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 43 | 98.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 3 |
| 44 | 98.66 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 45 | 98.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 46 | 98.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 47 | 98.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 13 |
| 48 | 98.85 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 49 | 98.85 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 63 | 98.90 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 69 | 98.91 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 82 | 98.92 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 18 |
| 94 | 98.95 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 107 | 99.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 18 |
| 111 | 99.26 | radiation | 1.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 130 | 99.32 | radiation | 1.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 150 | 99.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 19 |
| 158 | 99.38 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 17 |
| 161 | 99.40 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 20 |
| 166 | 99.44 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 17 |
| 171 | 99.45 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 179 | 99.47 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 190 | 99.47 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 205 | 99.48 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 222 | 99.50 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 226 | 99.50 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 230 | 99.50 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 233 | 99.50 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 286 | 99.54 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 10 | NA |
| 408 | 99.73 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 419 | 99.76 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 475 | 99.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 22 |
| 493 | 99.81 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 514 | 99.83 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 21 |
| 524 | 99.84 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 666 | 100.16 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 9 | NA |
| 667 | 100.16 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 9 | NA |
| 670 | 100.16 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 9 | NA |
| 695 | 100.26 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 732 | 100.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 16 |
| 734 | 100.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 16 |
| 742 | 100.40 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 16 |
| 745 | 100.40 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 23 |
| 762 | 100.47 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 763 | 100.48 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 774 | 100.51 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 3 | NA |
| 825 | 100.60 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 840 | 100.64 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 844 | 100.65 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 870 | 100.68 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 17 | 8 |
| 876 | 100.68 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 890 | 100.71 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 906 | 100.72 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 956 | 100.76 | precipitation | 0.1 | 43200 | > th | dose dependent | no | NA | NA |
| 990 | 100.79 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 997 | 100.79 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 19 |
| 1000 | 100.80 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 2 |