Os05g0443900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Basic leucine zipper protein (Liguleless2).
FiT-DB / Search/ Help/ Sample detail
|
Os05g0443900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Basic leucine zipper protein (Liguleless2).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.91 | 0.261 | 10.4 | 0.928 | 0.703 | 0.684 | -0.159 | 0.597 | 0.667 | 16.1 | 21.7 | 1406 | -- | -- |
| 31.79 | 0.263 | 10.4 | 0.869 | 0.709 | 0.61 | -0.197 | -- | 0.648 | 15.6 | 21.99 | 1123 | -- | -- |
| 30.98 | 0.259 | 10.4 | 0.93 | 0.702 | 0.684 | -- | 0.608 | 0.667 | 16 | 21.73 | 1405 | -- | -- |
| 31.63 | 0.262 | 10.4 | 0.788 | 0.724 | 0.64 | -- | -- | 0.629 | 15.8 | 21.9 | 1159 | -- | -- |
| 55.98 | 0.348 | 10.4 | 0.89 | -- | 0.663 | -- | 0.575 | 0.661 | -- | 21.8 | 1785 | -- | -- |
| 45.49 | 0.316 | 10.3 | 1.02 | 0.677 | -- | -0.148 | -- | 0.827 | 16.1 | -- | -- | -- | -- |
| 45.55 | 0.316 | 10.3 | 1.02 | 0.676 | -- | -- | -- | 0.826 | 16.1 | -- | -- | -- | -- |
| 51.1 | 0.333 | 10.4 | 0.828 | -- | 0.593 | -- | -- | 0.652 | -- | 21.91 | 295 | -- | -- |
| 40.77 | 0.297 | 10.4 | -- | 0.722 | 1.07 | -- | -- | 0.435 | 16.1 | 19.8 | 7919 | -- | -- |
| 70.39 | 0.392 | 10.3 | 0.996 | -- | -- | -- | -- | 0.808 | -- | -- | -- | -- | -- |
| 73.13 | 0.4 | 10.4 | -- | 0.657 | -- | -- | -- | 0.712 | 16.1 | -- | -- | -- | -- |
| 63.7 | 0.372 | 10.4 | -- | -- | 0.981 | -- | -- | 0.491 | -- | 18.19 | 36325 | -- | -- |
| 96.53 | 0.459 | 10.4 | -- | -- | -- | -- | -- | 0.697 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.39 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 15 |
| 8 | 31.46 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 9 | 31.46 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 11 | 31.47 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 33 | 31.57 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 98 | 31.96 | temperature | 25.0 | 720 | < th | dose dependent | sin | 22 | NA |
| 114 | 32.06 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 184 | 32.32 | temperature | 25.0 | 1440 | < th | dose dependent | no | NA | NA |
| 197 | 32.35 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 201 | 32.36 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 205 | 32.37 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 211 | 32.38 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 253 | 32.52 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 286 | 32.63 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 405 | 33.11 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 466 | 33.35 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 471 | 33.39 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 477 | 33.40 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 483 | 33.43 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 497 | 33.47 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 538 | 33.64 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 565 | 33.72 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 579 | 33.77 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 595 | 33.82 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 614 | 33.89 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 623 | 33.91 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 635 | 33.94 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 643 | 33.97 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 668 | 34.05 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 670 | 34.06 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 684 | 34.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 685 | 34.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 695 | 34.13 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 22 | 4 |
| 698 | 34.14 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 707 | 34.15 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 708 | 34.16 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 712 | 34.17 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 714 | 34.17 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 715 | 34.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 721 | 34.18 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 722 | 34.18 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 751 | 34.22 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 763 | 34.24 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 819 | 34.32 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 867 | 34.40 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 877 | 34.43 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 900 | 34.46 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 922 | 34.50 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 958 | 34.56 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 962 | 34.56 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 964 | 34.56 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 968 | 34.57 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 979 | 34.58 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 13 | 6 |