Os05g0443400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 17 protein.
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Os05g0443400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 17 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.47 | 0.452 | 8.82 | 0.352 | 2.1 | -3.11 | 0.737 | -0.0871 | 0.981 | 20.4 | 35.02 | 57 | 17.6 | 12.4 |
| 92.34 | 0.448 | 8.83 | 0.33 | 2.09 | -3.12 | 0.652 | -- | 0.974 | 20.4 | 34.51 | 59 | 17.6 | 12.4 |
| 93.58 | 0.451 | 8.83 | 0.295 | 2.1 | -3.15 | -- | 0.279 | 0.967 | 20.4 | 34.48 | 55 | 17.6 | 12.4 |
| 93.79 | 0.451 | 8.83 | 0.311 | 2.09 | -3.16 | -- | -- | 0.966 | 20.4 | 34.39 | 58 | 17.6 | 12.4 |
| 172.07 | 0.611 | 8.77 | -0.00908 | -- | -3.16 | -- | -0.302 | 0.949 | -- | 32.9 | 365 | 20.7 | 10.6 |
| 166.83 | 0.606 | 8.72 | 0.53 | 2.41 | -- | 0.402 | -- | 1.34 | 16.6 | -- | -- | -- | -- |
| 167.25 | 0.606 | 8.72 | 0.533 | 2.41 | -- | -- | -- | 1.35 | 16.5 | -- | -- | -- | -- |
| 143.41 | 0.558 | 8.74 | 0.0868 | -- | -3.6 | -- | -- | 1.05 | -- | 32.69 | 460 | 19.6 | 10.1 |
| 96.22 | 0.457 | 8.84 | -- | 2.09 | -3.23 | -- | -- | 0.923 | 20.4 | 34 | 59 | 17.6 | 12.4 |
| 478.04 | 1.02 | 8.7 | 0.44 | -- | -- | -- | -- | 1.28 | -- | -- | -- | -- | -- |
| 174.75 | 0.618 | 8.73 | -- | 2.4 | -- | -- | -- | 1.29 | 16.5 | -- | -- | -- | -- |
| 130.9 | 0.533 | 8.81 | -- | -- | -3.79 | -- | -- | 0.959 | -- | 37.02 | 593 | 18.6 | 9.85 |
| 483.14 | 1.03 | 8.71 | -- | -- | -- | -- | -- | 1.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.97 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 18 | 12 |
| 20 | 114.53 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 32 | 118.12 | temperature | 20.0 | 90 | > th | dose independent | rect. | 22 | 11 |
| 36 | 119.86 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 19 |
| 40 | 120.56 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 47 | 121.56 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 11 |
| 111 | 124.86 | temperature | 20.0 | 10 | > th | dose independent | rect. | 6 | 22 |
| 120 | 125.24 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 11 |
| 129 | 125.59 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 132 | 125.64 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 137 | 125.83 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 11 |
| 138 | 125.83 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 11 |
| 141 | 125.98 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 146 | 126.17 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 11 |
| 147 | 126.17 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 11 |
| 148 | 126.17 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 11 |
| 150 | 126.17 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 11 |
| 151 | 126.17 | radiation | 20.0 | 90 | < th | dose independent | rect. | 19 | 11 |
| 154 | 126.17 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 13 |
| 155 | 126.17 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 6 | 13 |
| 157 | 126.21 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 13 |
| 158 | 126.21 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 165 | 126.30 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 19 | 11 |
| 179 | 126.79 | wind | 9.0 | 90 | < th | dose independent | rect. | 6 | 13 |
| 187 | 127.07 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 12 |
| 211 | 127.84 | temperature | 30.0 | 10 | < th | dose dependent | sin | 9 | NA |
| 233 | 128.50 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 238 | 128.59 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 241 | 128.59 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 245 | 128.59 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 250 | 128.59 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 251 | 128.59 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 255 | 128.59 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 260 | 128.65 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 281 | 129.01 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 18 |
| 285 | 129.10 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 5 |
| 288 | 129.17 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 324 | 129.79 | temperature | 10.0 | 30 | > th | dose dependent | sin | 10 | NA |
| 331 | 129.84 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 3 |
| 367 | 130.23 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 369 | 130.29 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 381 | 130.50 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 6 | 13 |
| 393 | 130.65 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 5 |
| 397 | 130.66 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 412 | 130.91 | temperature | 20.0 | 10 | > th | dose independent | sin | 7 | NA |
| 415 | 130.93 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 23 |
| 424 | 130.99 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 447 | 131.22 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 456 | 131.35 | temperature | 20.0 | 10 | < th | dose independent | sin | 8 | NA |
| 459 | 131.39 | temperature | 20.0 | 90 | < th | dose independent | rect. | 17 | 13 |
| 463 | 131.47 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 490 | 131.72 | temperature | 25.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 502 | 131.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 528 | 132.11 | temperature | 20.0 | 10 | < th | dose independent | rect. | 17 | 14 |
| 532 | 132.15 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 22 |
| 533 | 132.16 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 14 |
| 537 | 132.22 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 545 | 132.26 | radiation | 1.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 550 | 132.30 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 589 | 132.55 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 685 | 133.06 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 696 | 133.15 | temperature | 20.0 | 90 | < th | dose independent | rect. | 11 | 19 |
| 769 | 133.42 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 19 | 11 |
| 834 | 133.80 | temperature | 20.0 | 90 | < th | dose independent | sin | 9 | NA |
| 872 | 133.97 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 13 |
| 874 | 133.97 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 6 | 21 |
| 922 | 134.22 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 933 | 134.25 | radiation | 40.0 | 90 | < th | dose independent | rect. | 6 | 13 |
| 962 | 134.38 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 19 | 11 |