Os05g0440800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0440800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.51 | 0.559 | 6.54 | -0.311 | 0.999 | 0.292 | 0.431 | 5.57 | -0.791 | 18.2 | 28.03 | 1317 | -- | -- |
| 146.34 | 0.563 | 6.68 | -1.31 | 0.937 | 0.871 | 0.313 | -- | -0.787 | 18.5 | 29.72 | 1441 | -- | -- |
| 141.97 | 0.555 | 6.54 | -0.304 | 0.999 | 0.286 | -- | 5.59 | -0.789 | 18.2 | 28.01 | 1319 | -- | -- |
| 144.31 | 0.559 | 6.66 | -1.5 | 0.951 | 0.871 | -- | -- | -0.859 | 18.2 | 29.53 | 1295 | -- | -- |
| 169.75 | 0.607 | 6.6 | -0.913 | -- | 1.09 | -- | 4.93 | -0.932 | -- | 26.59 | 647 | -- | -- |
| 183.73 | 0.635 | 6.7 | -1.26 | 0.938 | -- | 0.285 | -- | -1.02 | 18.7 | -- | -- | -- | -- |
| 183.93 | 0.635 | 6.7 | -1.27 | 0.939 | -- | -- | -- | -1.02 | 18.7 | -- | -- | -- | -- |
| 168.22 | 0.604 | 6.7 | -1.55 | -- | 1.49 | -- | -- | -1.11 | -- | 25.7 | 558 | -- | -- |
| 202.2 | 0.662 | 6.64 | -- | 0.984 | 0.691 | -- | -- | -0.725 | 18.2 | 30.2 | 1215 | -- | -- |
| 229.94 | 0.709 | 6.68 | -1.29 | -- | -- | -- | -- | -1.04 | -- | -- | -- | -- | -- |
| 226.19 | 0.704 | 6.67 | -- | 0.955 | -- | -- | -- | -0.879 | 18.6 | -- | -- | -- | -- |
| 228.24 | 0.704 | 6.65 | -- | -- | 1.28 | -- | -- | -0.893 | -- | 26.45 | 509 | -- | -- |
| 273.72 | 0.772 | 6.65 | -- | -- | -- | -- | -- | -0.895 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.09 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 2 | 116.47 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 18 |
| 3 | 116.52 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 4 | 116.58 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 8 | 116.95 | wind | 9 | 43200 | > th | dose dependent | sin | 13 | NA |
| 9 | 116.95 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 12 | 117.17 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 17 |
| 17 | 117.61 | wind | 5 | 14400 | > th | dose dependent | rect. | 19 | 18 |
| 18 | 117.69 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 28 | 117.82 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 16 |
| 29 | 117.83 | wind | 5 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 45 | 118.44 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 55 | 118.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 21 |
| 56 | 118.99 | wind | 9 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 63 | 119.08 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 65 | 119.09 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 21 |
| 67 | 119.10 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 72 | 119.19 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 75 | 119.23 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 76 | 119.23 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 20 |
| 78 | 119.25 | wind | 9 | 43200 | > th | dose independent | sin | 12 | NA |
| 87 | 119.30 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 88 | 119.31 | wind | 5 | 14400 | > th | dose independent | sin | 6 | NA |
| 106 | 119.40 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 120 | 119.49 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 121 | 119.51 | wind | 5 | 14400 | < th | dose independent | sin | 6 | NA |
| 126 | 119.53 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 130 | 119.57 | wind | 9 | 43200 | < th | dose independent | no | NA | NA |
| 137 | 119.60 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 152 | 119.65 | wind | 9 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 160 | 119.69 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 167 | 119.72 | wind | 9 | 43200 | < th | dose independent | sin | 13 | NA |
| 170 | 119.74 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 180 | 119.80 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 211 | 120.02 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 15 |
| 215 | 120.05 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 219 | 120.06 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 224 | 120.09 | wind | 5 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 227 | 120.10 | wind | 5 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 239 | 120.15 | wind | 9 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 243 | 120.17 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 245 | 120.18 | wind | 5 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 247 | 120.18 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 248 | 120.18 | wind | 9 | 43200 | > th | dose dependent | sin | 18 | NA |
| 262 | 120.23 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 18 |
| 294 | 120.37 | wind | 9 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 300 | 120.39 | wind | 7 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 318 | 120.48 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 332 | 120.52 | wind | 7 | 43200 | > th | dose independent | sin | 3 | NA |
| 343 | 120.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 348 | 120.59 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 368 | 120.65 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 376 | 120.66 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 392 | 120.70 | wind | 7 | 43200 | < th | dose independent | sin | 2 | NA |
| 412 | 120.77 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 428 | 120.83 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 470 | 121.03 | wind | 7 | 43200 | > th | dose dependent | sin | 2 | NA |
| 514 | 121.25 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 541 | 121.34 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 563 | 121.41 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 582 | 121.44 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 646 | 121.62 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 689 | 121.75 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 710 | 121.81 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 711 | 121.81 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 713 | 121.82 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 765 | 121.97 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 775 | 121.99 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 868 | 122.27 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 869 | 122.27 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 904 | 122.37 | wind | 3 | 43200 | > th | dose dependent | sin | 11 | NA |
| 957 | 122.58 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 965 | 122.60 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 988 | 122.67 | wind | 5 | 43200 | < th | dose independent | sin | 12 | NA |