Os05g0439100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor MYC7E (Fragment).
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Os05g0439100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor MYC7E (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.34 | 0.4 | 10.8 | -1.52 | 0.764 | 0.571 | 0.429 | 2.73 | 0.12 | 0.38 | 11.21 | 31082 | -- | -- |
| 75.15 | 0.404 | 10.8 | -0.575 | 0.65 | 1.26 | 0.0461 | -- | 0.432 | 0.578 | 5.202 | 33518 | -- | -- |
| 72.56 | 0.397 | 10.8 | -1.56 | 0.725 | 0.585 | -- | 2.73 | 0.113 | 0.214 | 9.211 | 30836 | -- | -- |
| 74.29 | 0.401 | 10.8 | -0.622 | 0.672 | 1.2 | -- | -- | 0.441 | 23.8 | 5.151 | 33595 | -- | -- |
| 101.39 | 0.469 | 10.8 | -1.34 | -- | 1.07 | -- | 2.38 | 0.182 | -- | 3.834 | 30638 | -- | -- |
| 105.8 | 0.482 | 10.9 | -1.15 | 0.733 | -- | 0.373 | -- | 0.0123 | 0.708 | -- | -- | -- | -- |
| 106.37 | 0.483 | 10.9 | -1.16 | 0.732 | -- | -- | -- | 0.0108 | 0.595 | -- | -- | -- | -- |
| 98.64 | 0.463 | 10.7 | -0.477 | -- | 1.38 | -- | -- | 0.54 | -- | 5.093 | 34949 | -- | -- |
| 74.36 | 0.402 | 10.7 | -- | 0.755 | 1.37 | -- | -- | 0.673 | 0.6 | 4.4 | 47520 | -- | -- |
| 139.92 | 0.553 | 10.8 | -1.14 | -- | -- | -- | -- | 0.0234 | -- | -- | -- | -- | -- |
| 142.1 | 0.558 | 10.8 | -- | 0.714 | -- | -- | -- | 0.14 | 0.516 | -- | -- | -- | -- |
| 101.56 | 0.469 | 10.7 | -- | -- | 1.64 | -- | -- | 0.642 | -- | 4.45 | 34935 | -- | -- |
| 174.11 | 0.616 | 10.8 | -- | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.30 | radiation | 10 | 43200 | < th | dose dependent | sin | 14 | NA |
| 2 | 72.30 | radiation | 10 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 3 | 72.32 | radiation | 10 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 8 | 72.46 | radiation | 10 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 10 | 72.48 | radiation | 10 | 43200 | < th | dose dependent | rect. | 15 | 16 |
| 27 | 72.51 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 28 | 72.51 | humidity | 70 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 42 | 72.52 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 45 | 72.53 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 18 |
| 46 | 72.53 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 18 |
| 51 | 72.53 | radiation | 10 | 43200 | < th | dose dependent | rect. | 12 | 7 |
| 56 | 72.53 | radiation | 10 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 57 | 72.53 | radiation | 10 | 43200 | < th | dose dependent | rect. | 12 | 16 |
| 58 | 72.54 | humidity | 80 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 88 | 72.57 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 92 | 72.57 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 21 |
| 123 | 72.60 | humidity | 80 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 133 | 72.61 | humidity | 70 | 43200 | < th | dose independent | sin | 22 | NA |
| 240 | 72.66 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 256 | 72.68 | humidity | 70 | 43200 | > th | dose independent | no | NA | NA |
| 267 | 72.68 | humidity | 70 | 43200 | > th | dose independent | rect. | 3 | 22 |
| 269 | 72.68 | humidity | 70 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 272 | 72.68 | humidity | 70 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 294 | 72.69 | humidity | 70 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 310 | 72.70 | humidity | 70 | 43200 | > th | dose independent | sin | 22 | NA |
| 349 | 72.71 | humidity | 70 | 43200 | < th | dose independent | no | NA | NA |
| 446 | 72.73 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 462 | 72.75 | humidity | 70 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 486 | 72.77 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 493 | 72.77 | humidity | 70 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 535 | 72.82 | radiation | 1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 544 | 72.83 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 547 | 72.84 | humidity | 70 | 43200 | < th | dose independent | rect. | 12 | 6 |
| 582 | 72.86 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 602 | 72.88 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 19 |
| 622 | 72.91 | humidity | 90 | 43200 | < th | dose dependent | sin | 11 | NA |
| 667 | 72.96 | humidity | 60 | 43200 | > th | dose dependent | rect. | 20 | 17 |
| 669 | 72.97 | humidity | 70 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 743 | 73.04 | humidity | 90 | 43200 | < th | dose dependent | rect. | 19 | 4 |
| 804 | 73.12 | humidity | 70 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 809 | 73.12 | humidity | 50 | 43200 | > th | dose dependent | sin | 7 | NA |
| 817 | 73.13 | radiation | 10 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 886 | 73.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 889 | 73.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 893 | 73.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 912 | 73.21 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 989 | 73.25 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 14 |