Os05g0437100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0437100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.18 | 0.546 | 6.63 | 1.53 | 0.385 | -1.51 | 1.39 | 3.87 | -0.111 | 7.89 | 15.7 | 711 | -- | -- |
| 144.17 | 0.564 | 6.71 | 0.798 | 0.923 | -1.75 | 0.217 | -- | -0.289 | 10.7 | 14.8 | 1051 | -- | -- |
| 138.38 | 0.548 | 6.65 | 1.31 | 0.413 | -1.55 | -- | 2.78 | -0.119 | 11.2 | 16.43 | 469 | -- | -- |
| 140.93 | 0.553 | 6.71 | 0.849 | 0.616 | -1.79 | -- | -- | -0.281 | 11.5 | 13.19 | 288 | -- | -- |
| 145.2 | 0.561 | 6.65 | 1.46 | -- | -1.81 | -- | 3.02 | -0.0953 | -- | 15.77 | 642 | -- | -- |
| 173.91 | 0.618 | 6.76 | 0.442 | 0.741 | -- | 0.607 | -- | -0.538 | 8.4 | -- | -- | -- | -- |
| 175.03 | 0.62 | 6.76 | 0.462 | 0.738 | -- | -- | -- | -0.538 | 8.55 | -- | -- | -- | -- |
| 150.56 | 0.571 | 6.72 | 0.912 | -- | -1.89 | -- | -- | -0.252 | -- | 14.03 | 614 | -- | -- |
| 157.93 | 0.585 | 6.74 | -- | 0.6 | -1.39 | -- | -- | -0.424 | 10.6 | 13.83 | 290 | -- | -- |
| 205.58 | 0.67 | 6.78 | 0.465 | -- | -- | -- | -- | -0.531 | -- | -- | -- | -- | -- |
| 180.66 | 0.629 | 6.77 | -- | 0.739 | -- | -- | -- | -0.589 | 8.51 | -- | -- | -- | -- |
| 170.38 | 0.608 | 6.75 | -- | -- | -1.54 | -- | -- | -0.394 | -- | 14.8 | 576 | -- | -- |
| 211.28 | 0.678 | 6.79 | -- | -- | -- | -- | -- | -0.582 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.14 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 2 | 130.15 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 6 | 130.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 8 | 130.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 23 | 131.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 27 | 131.99 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 29 | 132.10 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 32 | 132.23 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 34 | 132.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 37 | 132.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 39 | 132.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 41 | 132.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 12 |
| 45 | 132.60 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 47 | 132.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 15 |
| 51 | 132.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 8 |
| 79 | 132.87 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 91 | 132.97 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 92 | 132.98 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 94 | 132.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 15 |
| 103 | 133.05 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 130 | 133.20 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 167 | 133.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 170 | 133.37 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 171 | 133.39 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 177 | 133.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 185 | 133.45 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 216 | 133.60 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 248 | 133.73 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 267 | 133.81 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 295 | 133.92 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 298 | 133.92 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 300 | 133.93 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 311 | 134.00 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 335 | 134.06 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 341 | 134.08 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 350 | 134.11 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 364 | 134.15 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 370 | 134.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 374 | 134.19 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 384 | 134.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 388 | 134.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 401 | 134.24 | radiation | 10 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 410 | 134.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 470 | 134.40 | humidity | 80 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 480 | 134.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 487 | 134.43 | radiation | 10 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 496 | 134.45 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 506 | 134.46 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 513 | 134.47 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 514 | 134.47 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 569 | 134.54 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 597 | 134.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 646 | 134.62 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 677 | 134.64 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 702 | 134.68 | wind | 5 | 43200 | < th | dose independent | sin | 16 | NA |
| 713 | 134.69 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 716 | 134.69 | wind | 3 | 43200 | > th | dose dependent | sin | 16 | NA |
| 717 | 134.69 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 731 | 134.71 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 738 | 134.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 744 | 134.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 795 | 134.78 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 14 |
| 797 | 134.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 805 | 134.80 | humidity | 80 | 43200 | > th | dose dependent | rect. | 7 | 6 |
| 845 | 134.84 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 866 | 134.87 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 909 | 134.91 | wind | 5 | 43200 | > th | dose independent | sin | 16 | NA |
| 917 | 134.92 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 934 | 134.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 12 |