Os05g0436900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, DHHC-type domain containing protein.
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Os05g0436900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, DHHC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.98 | 0.679 | 4.18 | -2.41 | 1.26 | 2.7 | -0.773 | -5.81 | -0.329 | 21 | 26.24 | 1196 | -- | -- |
| 221.82 | 0.694 | 4.09 | -1.22 | 1.16 | 2.32 | -1 | -- | -0.369 | 21.2 | 23.26 | 2369 | -- | -- |
| 211.01 | 0.677 | 4.18 | -2.42 | 1.27 | 2.69 | -- | -5.91 | -0.34 | 21.1 | 26.24 | 1206 | -- | -- |
| 224.53 | 0.698 | 4.08 | -1.19 | 1.18 | 2.29 | -- | -- | -0.335 | 21.3 | 23.28 | 2359 | -- | -- |
| 282.62 | 0.783 | 4.24 | -2.93 | -- | 3.34 | -- | -6.91 | -0.694 | -- | 24.71 | 2219 | -- | -- |
| 383.35 | 0.918 | 4 | -0.418 | 1.54 | -- | -0.527 | -- | 0.0515 | 21.8 | -- | -- | -- | -- |
| 384.41 | 0.918 | 4 | -0.398 | 1.54 | -- | -- | -- | 0.0521 | 21.9 | -- | -- | -- | -- |
| 255.55 | 0.745 | 4.06 | -1.2 | -- | 3.09 | -- | -- | -0.355 | -- | 23.81 | 887 | -- | -- |
| 249.9 | 0.736 | 4.06 | -- | 1.21 | 1.99 | -- | -- | -0.213 | 21 | 23.58 | 1113 | -- | -- |
| 526.39 | 1.07 | 3.96 | -0.381 | -- | -- | -- | -- | 0.0519 | -- | -- | -- | -- | -- |
| 388.59 | 0.922 | 3.99 | -- | 1.54 | -- | -- | -- | 0.0965 | 21.9 | -- | -- | -- | -- |
| 289.7 | 0.793 | 4 | -- | -- | 2.82 | -- | -- | -0.133 | -- | 24.32 | 887 | -- | -- |
| 530.22 | 1.07 | 3.95 | -- | -- | -- | -- | -- | 0.0942 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 211.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 6 | 212.61 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 11 | 213.04 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 16 | 213.56 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 21 |
| 17 | 213.64 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 20 | 213.78 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 26 | 214.06 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 29 | 214.20 | wind | 5 | 43200 | > th | dose dependent | sin | 2 | NA |
| 37 | 214.50 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 42 | 214.63 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 66 | 215.11 | wind | 5 | 43200 | > th | dose independent | sin | 2 | NA |
| 72 | 215.18 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 123 | 216.08 | wind | 5 | 43200 | < th | dose independent | sin | 2 | NA |
| 171 | 217.37 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 208 | 218.11 | wind | 5 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 217 | 218.19 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 220 | 218.20 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 238 | 218.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 291 | 219.41 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 20 |
| 304 | 219.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 334 | 219.78 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 20 |
| 362 | 219.95 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 378 | 220.03 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 399 | 220.12 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 411 | 220.20 | wind | 5 | 43200 | > th | dose dependent | rect. | 7 | 16 |
| 414 | 220.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 432 | 220.31 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 442 | 220.37 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 449 | 220.42 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 536 | 220.86 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 630 | 221.50 | temperature | 25 | 1440 | > th | dose dependent | sin | 0 | NA |
| 677 | 221.76 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 935 | 223.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 957 | 223.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 974 | 223.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 4 |
| 985 | 223.86 | temperature | 25 | 1440 | > th | dose dependent | sin | 10 | NA |