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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0436100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ser Thr specific protein kinase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.73 (0.0671) R2 : 0.179
β1 : 0.232 (0.247) R2dD : 0.00304 R2D : -0.0309
β2 : 0.651 (0.143) R2dC : 0.0381 R2C : 0.0191
β3 : 4.94 (0.825) R2dE : 0.394 R2E : -0.494
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 18.8 (2.41) R2dD*E : 0.621 R2D*E : -0.255
γ1 : 0.358 (0.131) R2dN8 : 0.0194 R2N8 : -0.032
σ : 1.09
deviance : 544.77
__
_____
C
peak time of C : 22.3
E
wheather : radiation
threshold : 1.705
memory length : 938
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 11

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
545.35 1.1 3.72 0.242 0.644 4.85 -0.478 18.7 0.361 22.2 1.537 881 17.9 11
623.63 1.17 3.47 -0.0673 0.66 0.027 0.347 -- 0.384 23 1.537 881 17.9 11
544.77 1.09 3.73 0.232 0.651 4.94 -- 18.8 0.358 22.3 1.705 938 17.9 11
598.54 1.14 3.47 -0.0177 0.745 1.11 -- -- 0.388 22.4 -0.8706 1200 16.4 11.3
567.39 1.11 3.71 0.372 -- 5.26 -- 19.1 0.394 -- 1.645 947 17.9 11
623.63 1.17 3.47 -0.0681 0.66 -- 0.346 -- 0.383 22.9 -- -- -- --
624.13 1.17 3.47 -0.0816 0.659 -- -- -- 0.382 22.9 -- -- -- --
595.8 1.14 3.48 -0.0319 -- 1.45 -- -- 0.302 -- -4.947 1673 16.5 11.5
583.91 1.13 3.48 -- 2.27 2.53 -- -- 0.289 20.7 -5.586 1138 16.7 12.1
651.07 1.19 3.46 -0.0677 -- -- -- -- 0.387 -- -- -- -- --
624.3 1.17 3.47 -- 0.659 -- -- -- 0.391 22.9 -- -- -- --
591.91 1.13 3.49 -- -- 1.42 -- -- 0.287 -- -7.709 1587 16.6 11.8
651.19 1.19 3.45 -- -- -- -- -- 0.394 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 553.59 radiation 1 720 > th dose dependent rect. 18 11
2 554.24 temperature 25 720 > th dose dependent rect. 18 1
4 554.98 temperature 25 720 > th dose dependent rect. 17 5
5 555.16 radiation 1 720 > th dose dependent rect. 18 1
26 559.21 humidity 70 720 > th dose independent rect. 19 7
29 559.45 temperature 10 720 > th dose dependent rect. 16 6
30 559.66 radiation 10 14400 > th dose independent rect. 5 1
52 560.67 humidity 80 43200 < th dose dependent rect. 22 1
75 562.66 wind 1 43200 < th dose dependent rect. 1 1
77 562.69 wind 3 43200 > th dose dependent rect. 2 15
78 562.70 wind 3 43200 > th dose dependent rect. 24 17
81 562.81 humidity 80 43200 < th dose independent rect. 22 3
93 563.21 wind 3 43200 < th dose independent rect. 2 2
98 563.36 humidity 80 43200 > th dose independent rect. 23 3
100 563.38 humidity 80 43200 > th dose independent rect. 23 5
103 563.46 wind 3 43200 > th dose independent rect. 2 12
115 563.62 radiation 20 14400 < th dose independent rect. 3 3
121 563.75 wind 3 43200 < th dose dependent rect. 9 1
129 563.80 wind 3 43200 > th dose independent rect. 2 2
156 564.05 humidity 80 43200 > th dose independent rect. 3 1
159 564.08 wind 3 43200 > th dose dependent sin 2 NA
164 564.12 wind 9 43200 < th dose dependent rect. 3 13
189 564.23 wind 9 43200 < th dose dependent rect. 24 16
194 564.26 humidity 70 720 < th dose independent rect. 18 13
199 564.29 wind 3 43200 > th dose independent rect. 21 17
203 564.34 temperature 30 4320 > th dose dependent rect. 18 1
227 564.47 humidity 70 720 < th dose independent rect. 18 2
240 564.49 wind 3 43200 < th dose independent rect. 2 12
243 564.50 humidity 80 43200 < th dose independent rect. 3 1
257 564.59 wind 3 43200 > th dose independent sin 6 NA
276 564.75 radiation 30 14400 < th dose independent rect. 16 11
290 564.84 radiation 30 14400 < th dose independent rect. 16 2
294 564.87 temperature 25 720 > th dose independent rect. 17 2
297 564.88 wind 3 43200 > th dose independent rect. 20 14
312 564.95 wind 9 43200 < th dose dependent sin 3 NA
319 564.99 wind 3 43200 > th dose independent rect. 6 8
321 565.00 wind 3 43200 < th dose independent rect. 20 16
322 565.00 humidity 80 43200 < th dose dependent rect. 21 11
369 565.22 wind 3 43200 < th dose independent sin 6 NA
372 565.23 wind 3 43200 < th dose independent rect. 23 13
417 565.40 wind 9 43200 < th dose dependent rect. 9 5
421 565.42 humidity 80 720 < th dose dependent rect. 18 1
426 565.43 wind 1 43200 > th dose dependent rect. 9 5
428 565.44 wind 3 43200 > th dose dependent rect. 6 1
443 565.52 wind 5 43200 < th dose independent rect. 3 14
470 565.61 radiation 30 14400 < th dose independent rect. 16 9
471 565.61 wind 3 43200 > th dose independent rect. 20 11
492 565.68 wind 3 43200 > th dose independent rect. 2 8
523 565.80 wind 3 43200 < th dose independent rect. 21 8
532 565.83 wind 5 43200 < th dose dependent rect. 9 3
547 565.89 wind 3 43200 > th dose dependent rect. 9 23
557 565.95 wind 3 43200 < th dose independent rect. 6 6
558 565.95 radiation 1 720 > th dose independent rect. 18 11
567 565.99 wind 3 43200 < th dose independent rect. 9 3
569 565.99 wind 3 43200 > th dose dependent no NA NA
579 566.01 temperature 10 720 > th dose dependent rect. 16 9
597 566.08 wind 3 43200 > th dose independent rect. 20 9
598 566.08 wind 3 43200 < th dose independent rect. 21 10
605 566.10 wind 3 43200 < th dose independent rect. 23 6
613 566.12 wind 3 43200 > th dose independent rect. 9 3
648 566.24 wind 3 43200 > th dose independent rect. 9 1
677 566.37 wind 3 43200 > th dose dependent rect. 5 23
688 566.40 humidity 70 720 > th dose independent rect. 18 14
703 566.46 wind 3 43200 > th dose independent rect. 2 5
725 566.55 wind 3 43200 < th dose independent rect. 9 1
779 566.73 wind 5 43200 < th dose independent sin 1 NA
783 566.73 humidity 80 720 < th dose dependent rect. 17 4
828 566.85 humidity 70 720 < th dose dependent rect. 18 13
879 566.97 wind 5 43200 < th dose dependent rect. 11 1
901 567.01 wind 3 43200 > th dose independent rect. 24 5
917 567.06 radiation 1 720 > th dose independent rect. 18 1
929 567.07 wind 9 43200 < th dose dependent rect. 11 2
935 567.08 wind 5 43200 < th dose independent rect. 9 23
946 567.09 temperature 30 720 < th dose dependent rect. 19 4
969 567.14 wind 3 43200 > th dose independent rect. 6 4