Os05g0433200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0433200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.39 | 0.421 | 9.98 | 1.8 | 1.04 | -3.44 | 0.166 | -7.64 | -0.789 | 3.3 | 18.91 | 4803 | -- | -- |
| 88.82 | 0.439 | 10.2 | 1.76 | 1.03 | -0.455 | 0.106 | -- | -0.88 | 3.36 | 23.94 | 2997 | -- | -- |
| 79.75 | 0.416 | 9.81 | 1.48 | 1.02 | -9.09 | -- | -19.7 | -0.815 | 3.36 | 17.63 | 5042 | -- | -- |
| 86.18 | 0.432 | 10.2 | 1.62 | 0.991 | -0.563 | -- | -- | -0.973 | 3.46 | 33.53 | 37905 | -- | -- |
| 139.29 | 0.55 | 9.81 | 1.39 | -- | -9.23 | -- | -19.7 | -0.776 | -- | 17.78 | 5473 | -- | -- |
| 91.47 | 0.448 | 10.1 | 1.99 | 1.05 | -- | 0.214 | -- | -0.742 | 3.27 | -- | -- | -- | -- |
| 91.62 | 0.448 | 10.1 | 1.99 | 1.05 | -- | -- | -- | -0.744 | 3.3 | -- | -- | -- | -- |
| 133.02 | 0.54 | 10.1 | 2.25 | -- | 1.22 | -- | -- | -0.554 | -- | 42.4 | 47520 | -- | -- |
| 92.99 | 0.449 | 10.3 | -- | 1.03 | -1.63 | -- | -- | -1.45 | 3.37 | 67.13 | 47520 | -- | -- |
| 154.27 | 0.58 | 10.1 | 2.03 | -- | -- | -- | -- | -0.716 | -- | -- | -- | -- | -- |
| 195.71 | 0.654 | 10.2 | -- | 1.09 | -- | -- | -- | -0.965 | 3.3 | -- | -- | -- | -- |
| 152.22 | 0.575 | 10.3 | -- | -- | -1.69 | -- | -- | -1.45 | -- | 77.67 | 47520 | -- | -- |
| 263.19 | 0.757 | 10.2 | -- | -- | -- | -- | -- | -0.941 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.94 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 4 |
| 2 | 69.13 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 6 | 69.69 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 8 | 69.84 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 18 | 70.08 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 24 | 70.17 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 29 | 70.22 | wind | 1.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 36 | 70.27 | wind | 1.0 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 37 | 70.27 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 39 | 70.28 | wind | 1.0 | 14400 | < th | dose dependent | sin | 11 | NA |
| 47 | 70.34 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 53 | 70.37 | wind | 1.0 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 64 | 70.42 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 80 | 70.50 | wind | 1.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 160 | 70.87 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 12 | 20 |
| 167 | 70.90 | wind | 1.0 | 14400 | < th | dose independent | rect. | 12 | 21 |
| 173 | 70.92 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 183 | 70.96 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 186 | 70.97 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 20 |
| 203 | 71.02 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 207 | 71.03 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 20 |
| 231 | 71.08 | wind | 1.0 | 14400 | > th | dose independent | rect. | 12 | 21 |
| 247 | 71.10 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 286 | 71.20 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 22 |
| 317 | 71.26 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 341 | 71.33 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 22 |
| 368 | 71.40 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 18 |
| 378 | 71.42 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 380 | 71.42 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 20 |
| 385 | 71.43 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 395 | 71.46 | wind | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 411 | 71.49 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 23 |
| 429 | 71.53 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 20 |
| 445 | 71.57 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 22 |
| 455 | 71.60 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 468 | 71.64 | wind | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 472 | 71.65 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 485 | 71.68 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 23 |
| 492 | 71.71 | wind | 1.0 | 14400 | < th | dose dependent | no | NA | NA |
| 497 | 71.72 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 539 | 71.93 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 567 | 72.09 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 577 | 72.16 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 635 | 72.41 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 639 | 72.43 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 21 |
| 656 | 72.52 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 660 | 72.54 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 706 | 72.83 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 713 | 72.87 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 726 | 72.91 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 769 | 73.13 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 14 |
| 786 | 73.21 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 14 |
| 788 | 73.21 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 16 |
| 808 | 73.32 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 809 | 73.32 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 16 |
| 811 | 73.33 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 831 | 73.46 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 864 | 73.63 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 896 | 73.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 900 | 73.88 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 901 | 73.89 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 903 | 73.89 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 919 | 74.00 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 948 | 74.16 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 951 | 74.17 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 954 | 74.18 | wind | 1.0 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 967 | 74.23 | wind | 1.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 978 | 74.25 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 980 | 74.25 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 991 | 74.29 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 1000 | 74.32 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 3 | 12 |