Os05g0431700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os05g0431700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 314.39 | 0.833 | 10.6 | 1.7 | 3.02 | -3.06 | -1.88 | 1.91 | -0.000227 | 14.3 | 25.52 | 1128 | 8.33 | -- |
| 316.61 | 0.829 | 10.6 | 1.46 | 3.09 | -2.85 | -1.85 | -- | -0.0237 | 14.3 | 25.61 | 1148 | 8.37 | -- |
| 326.5 | 0.842 | 10.6 | 1.77 | 3.04 | -3.11 | -- | 2.85 | -0.000171 | 14.4 | 25.58 | 1122 | 8.05 | -- |
| 329.8 | 0.846 | 10.6 | 1.29 | 3.08 | -2.77 | -- | -- | -0.0772 | 14.3 | 25.65 | 1124 | 7.83 | -- |
| 379.06 | 0.907 | 10.5 | 1.99 | -- | -6.23 | -- | 2.67 | 0.366 | -- | -35.17 | 1255 | 14 | -- |
| 577.93 | 1.13 | 10.7 | 0.564 | 3.78 | -- | -1.14 | -- | -0.2 | 14.5 | -- | -- | -- | -- |
| 582.6 | 1.13 | 10.7 | 0.534 | 3.78 | -- | -- | -- | -0.207 | 14.5 | -- | -- | -- | -- |
| 380.23 | 0.908 | 10.5 | 1.62 | -- | -6.25 | -- | -- | 0.29 | -- | -39.65 | 1272 | 14.1 | -- |
| 365.97 | 0.891 | 10.7 | -- | 3.09 | -2.64 | -- | -- | -0.303 | 14.4 | 25.7 | 1075 | 7.01 | -- |
| 1423.43 | 1.76 | 10.7 | 0.373 | -- | -- | -- | -- | -0.301 | -- | -- | -- | -- | -- |
| 590.11 | 1.14 | 10.7 | -- | 3.77 | -- | -- | -- | -0.266 | 14.5 | -- | -- | -- | -- |
| 434.5 | 0.971 | 10.6 | -- | -- | -5.74 | -- | -- | 0.0654 | -- | -28.72 | 1201 | 13.4 | -- |
| 1427.1 | 1.76 | 10.7 | -- | -- | -- | -- | -- | -0.342 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 334.66 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 3 | 336.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 10 |
| 20 | 338.63 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 27 | 339.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 196 | 344.44 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 209 | 345.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 213 | 345.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 229 | 345.66 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 246 | 346.20 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 251 | 346.31 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 279 | 347.02 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 11 |
| 281 | 347.06 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 290 | 347.40 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 294 | 347.48 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 298 | 347.63 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 378 | 350.05 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 379 | 350.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 12 |
| 388 | 350.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 390 | 350.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 393 | 350.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 433 | 351.30 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 470 | 352.20 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 516 | 353.31 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 525 | 353.78 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 530 | 354.09 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 551 | 354.77 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 730 | 359.34 | temperature | 30 | 1440 | < th | dose independent | sin | 13 | NA |
| 749 | 359.75 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 857 | 360.62 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 863 | 360.86 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 897 | 361.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 902 | 361.57 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 967 | 362.43 | temperature | 25 | 14400 | > th | dose dependent | sin | 12 | NA |
| 979 | 362.83 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 998 | 363.52 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 5 |