Os05g0430900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os05g0430900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 180.92 | 0.632 | 2.98 | 2.54 | 0.388 | -29 | 0.484 | 177 | 0.0366 | 3.91 | 995.8 | 1289 | -- | -- |
| 191.26 | 0.649 | 3.56 | -0.85 | 0.439 | 0.128 | 0.575 | -- | 0.0213 | 4.16 | 995.8 | 1289 | -- | -- |
| 181.06 | 0.627 | 3.02 | 2.3 | 0.406 | -29 | -- | 177 | 0.0358 | 4.37 | 996.1 | 1246 | -- | -- |
| 183.19 | 0.63 | 3.56 | -0.902 | 0.426 | 1.31 | -- | -- | 0.0404 | 4.83 | 997.5 | 1346 | -- | -- |
| 189.62 | 0.641 | 3.02 | 2.34 | -- | -29.1 | -- | 178 | 0.0465 | -- | 996.1 | 1357 | -- | -- |
| 191.3 | 0.648 | 3.56 | -0.849 | 0.436 | -- | 0.568 | -- | 0.0205 | 4.16 | -- | -- | -- | -- |
| 192.01 | 0.649 | 3.56 | -0.854 | 0.448 | -- | -- | -- | 0.0173 | 4.65 | -- | -- | -- | -- |
| 192.79 | 0.647 | 3.56 | -0.895 | -- | 1.4 | -- | -- | 0.0523 | -- | 997.5 | 1326 | -- | -- |
| 204.16 | 0.665 | 3.54 | -- | 0.426 | 1.02 | -- | -- | 0.143 | 4.57 | 996.7 | 2007 | -- | -- |
| 202.69 | 0.665 | 3.57 | -0.837 | -- | -- | -- | -- | 0.0291 | -- | -- | -- | -- | -- |
| 211.23 | 0.68 | 3.54 | -- | 0.433 | -- | -- | -- | 0.112 | 4.7 | -- | -- | -- | -- |
| 213.67 | 0.681 | 3.54 | -- | -- | 1.22 | -- | -- | 0.147 | -- | 997.4 | 1326 | -- | -- |
| 221.16 | 0.694 | 3.55 | -- | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.18 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 1 |
| 8 | 168.18 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 49 | 175.37 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 57 | 176.53 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 1 | 18 |
| 65 | 176.85 | temperature | 25 | 720 | < th | dose independent | rect. | 22 | 8 |
| 66 | 176.92 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 71 | 177.27 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 9 |
| 82 | 177.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 94 | 177.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 102 | 178.03 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 111 | 178.12 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 122 | 178.25 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 126 | 178.33 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 139 | 178.52 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 158 | 178.73 | temperature | 25 | 720 | > th | dose independent | rect. | 3 | 2 |
| 181 | 179.06 | atmosphere | 995 | 1440 | > th | dose independent | sin | 0 | NA |
| 189 | 179.17 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 2 |
| 200 | 179.22 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 3 |
| 209 | 179.26 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 1 |
| 222 | 179.36 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 248 | 179.56 | humidity | 70 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 268 | 179.75 | temperature | 25 | 720 | < th | dose independent | sin | 10 | NA |
| 282 | 179.82 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 288 | 179.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 289 | 179.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 294 | 179.86 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 295 | 179.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 297 | 179.87 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 302 | 179.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 304 | 179.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 333 | 180.07 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 346 | 180.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 347 | 180.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 348 | 180.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 353 | 180.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 377 | 180.31 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 387 | 180.34 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 4 | 7 |
| 388 | 180.35 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 393 | 180.38 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 396 | 180.39 | atmosphere | 995 | 1440 | > th | dose independent | sin | 7 | NA |
| 398 | 180.39 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 408 | 180.42 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 15 | 3 |
| 410 | 180.42 | humidity | 70 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 526 | 180.58 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 527 | 180.58 | humidity | 80 | 270 | < th | dose independent | rect. | 21 | 20 |
| 532 | 180.60 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 535 | 180.60 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 582 | 180.64 | humidity | 70 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 590 | 180.66 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 625 | 180.76 | humidity | 70 | 270 | > th | dose dependent | rect. | 7 | 16 |
| 646 | 180.80 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 6 | 5 |
| 674 | 180.87 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 12 |
| 675 | 180.87 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 684 | 180.89 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 4 | 22 |
| 734 | 180.94 | humidity | 70 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 745 | 180.98 | atmosphere | 995 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 773 | 180.98 | atmosphere | 995 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 800 | 180.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 811 | 181.00 | humidity | 70 | 10 | > th | dose dependent | sin | 19 | NA |
| 850 | 181.08 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 890 | 181.18 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 926 | 181.25 | atmosphere | 995 | 1440 | < th | dose independent | sin | 8 | NA |
| 965 | 181.28 | atmosphere | 995 | 1440 | > th | dose independent | no | NA | NA |
| 986 | 181.28 | atmosphere | 995 | 1440 | < th | dose independent | no | NA | NA |