Os05g0430200 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0430200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Deoxynucleoside kinase family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	10.2	(0.0317)	R²	:	0.849
β₁	:	0.784	(0.118)	R²_dD	:	0.0155	R²_D	:	0.0211
β₂	:	2.39	(0.125)	R²_dC	:	0.283	R²_C	:	0.628
β₃	:	2.46	(0.155)	R²_dE	:	0.192	R²_E	:	0.546
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.17	(0.068)	R²_dN8	:	0.00281	R²_N8	:	0.00422
σ	:	0.593
deviance	:	162.32
__

_____

C
peak time of C	:	16.8
E
wheather	:	temperature
threshold	:	5.993
memory length	:	116
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	7.75
open length of G	:	19.6

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
162.71	0.599	10.2	0.805	2.48	2.38	-0.248	0.736	-0.174	16.9	8.244	100	7.85	19.8
163.09	0.595	10.2	0.759	2.39	2.46	-0.141	--	-0.177	16.9	7.969	104	7.83	19.7
162.24	0.593	10.2	0.797	2.39	2.44	--	0.399	-0.167	16.9	7.445	118	7.75	19.6
162.32	0.593	10.2	0.784	2.39	2.46	--	--	-0.17	16.8	5.993	116	7.75	19.6
226.64	0.701	10.2	0.845	--	4.72	--	0.394	-0.153	--	2.195	280	6.48	18
247.34	0.737	10.2	1.07	3.9	--	0.596	--	-0.0771	17	--	--	--	--
248.24	0.738	10.2	1.07	3.9	--	--	--	-0.0742	17	--	--	--	--
221.81	0.694	10.2	0.601	--	4.5	--	--	-0.194	--	5.219	264	6.92	17.4
177.41	0.62	10.2	--	2.28	2.69	--	--	-0.258	16.8	7.244	130	7.62	19.7
1047.72	1.51	10.2	0.928	--	--	--	--	-0.174	--	--	--	--	--
278.37	0.78	10.3	--	3.88	--	--	--	-0.193	17	--	--	--	--
230.02	0.706	10.2	--	--	4.5	--	--	-0.287	--	6.006	259	6.95	17.4
1070.44	1.53	10.2	--	--	--	--	--	-0.277	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	167.55	temperature	10.0	90	> th	dose dependent	rect.	8	20
7	173.41	temperature	30.0	90	< th	dose dependent	rect.	4	17
8	173.53	temperature	30.0	90	< th	dose dependent	rect.	4	15
60	182.31	wind	7.0	270	< th	dose independent	rect.	6	21
67	183.03	wind	7.0	90	< th	dose independent	rect.	8	20
70	183.27	wind	5.0	270	< th	dose independent	rect.	3	3
79	184.38	wind	5.0	270	< th	dose independent	rect.	4	1
98	185.61	wind	9.0	270	< th	dose independent	rect.	5	23
100	185.71	radiation	1.0	270	< th	dose dependent	rect.	3	15
112	186.87	temperature	10.0	270	> th	dose dependent	rect.	22	13
119	187.31	atmosphere	1000.0	90	> th	dose dependent	rect.	4	4
120	187.38	atmosphere	1005.0	10	> th	dose dependent	rect.	4	4
121	187.49	temperature	10.0	270	> th	dose dependent	rect.	6	9
124	187.59	precipitation	0.1	270	< th	dose independent	rect.	6	21
125	187.59	precipitation	0.1	270	< th	dose dependent	rect.	6	21
131	187.75	radiation	1.0	270	< th	dose independent	rect.	3	15
139	188.02	precipitation	0.1	90	< th	dose independent	rect.	8	20
140	188.02	precipitation	0.1	90	< th	dose dependent	rect.	8	20
146	188.29	precipitation	0.1	270	< th	dose independent	rect.	3	3
147	188.29	precipitation	0.1	270	< th	dose dependent	rect.	3	3
148	188.33	temperature	15.0	270	> th	dose dependent	rect.	7	4
154	188.65	temperature	15.0	270	> th	dose dependent	rect.	6	6
171	189.38	temperature	10.0	90	> th	dose independent	rect.	4	4
173	189.38	temperature	30.0	90	< th	dose independent	rect.	4	4
174	189.38	humidity	50.0	90	> th	dose independent	rect.	4	4
176	189.38	atmosphere	995.0	90	> th	dose independent	rect.	4	4
177	189.38	atmosphere	1015.0	90	< th	dose independent	rect.	4	4
178	189.38	temperature	10.0	90	> th	dose independent	rect.	8	20
180	189.43	temperature	15.0	90	> th	dose dependent	rect.	8	7
182	189.46	temperature	30.0	270	< th	dose dependent	rect.	4	1
186	189.51	temperature	15.0	270	> th	dose dependent	rect.	8	2
187	189.52	radiation	1.0	270	< th	dose dependent	rect.	3	9
197	189.54	radiation	20.0	270	< th	dose independent	rect.	3	3
200	189.54	temperature	10.0	270	> th	dose independent	rect.	6	21
207	189.61	radiation	1.0	270	< th	dose dependent	rect.	4	1
211	189.70	atmosphere	1000.0	270	> th	dose dependent	rect.	4	1
215	189.76	radiation	40.0	270	< th	dose dependent	rect.	3	3
217	189.79	temperature	25.0	90	< th	dose independent	rect.	4	18
219	189.81	precipitation	0.1	270	< th	dose independent	rect.	4	1
220	189.81	precipitation	0.1	270	< th	dose dependent	rect.	4	1
229	190.00	wind	1.0	270	> th	dose independent	rect.	3	2
245	190.48	wind	9.0	90	< th	dose dependent	rect.	8	20
247	190.54	temperature	10.0	90	> th	dose dependent	rect.	8	9
249	190.59	temperature	10.0	270	> th	dose independent	rect.	4	1
251	190.59	temperature	30.0	270	< th	dose independent	rect.	4	1
252	190.59	humidity	50.0	270	> th	dose independent	rect.	4	1
255	190.59	atmosphere	995.0	270	> th	dose independent	rect.	4	1
256	190.59	atmosphere	1010.0	270	< th	dose independent	rect.	4	1
258	190.59	radiation	20.0	270	< th	dose independent	rect.	4	1
261	190.59	temperature	10.0	270	> th	dose independent	rect.	5	23
271	190.70	radiation	40.0	270	< th	dose dependent	rect.	4	1
292	191.20	radiation	1.0	270	< th	dose independent	rect.	4	1
297	191.23	radiation	1.0	270	< th	dose independent	rect.	3	9
306	191.32	wind	9.0	270	< th	dose dependent	rect.	3	3
316	191.53	temperature	30.0	90	< th	dose dependent	rect.	4	4
318	191.57	wind	9.0	270	< th	dose dependent	rect.	4	1
331	191.86	temperature	15.0	10	> th	dose dependent	rect.	8	7
333	191.88	temperature	30.0	90	< th	dose dependent	sin	2	NA
334	191.92	temperature	10.0	90	> th	dose dependent	rect.	8	11
357	192.39	wind	9.0	1440	< th	dose independent	rect.	5	4
358	192.39	temperature	10.0	1440	> th	dose independent	rect.	5	4
361	192.39	humidity	50.0	1440	> th	dose independent	rect.	5	4
363	192.39	atmosphere	995.0	1440	> th	dose independent	rect.	5	4
364	192.39	atmosphere	1015.0	1440	< th	dose independent	rect.	5	4
365	192.39	temperature	10.0	1440	> th	dose independent	rect.	9	20
401	192.83	radiation	1.0	270	> th	dose independent	sin	2	NA
424	193.15	temperature	25.0	270	< th	dose independent	rect.	2	17
435	193.36	temperature	10.0	90	> th	dose dependent	sin	3	NA
491	194.07	temperature	30.0	90	< th	dose dependent	rect.	4	7
496	194.12	radiation	20.0	270	< th	dose dependent	rect.	2	7
497	194.13	wind	9.0	270	< th	dose dependent	rect.	6	20
500	194.15	temperature	15.0	10	> th	dose dependent	rect.	8	11
532	194.54	temperature	15.0	10	> th	dose dependent	rect.	8	9
534	194.57	atmosphere	1005.0	90	> th	dose independent	rect.	4	4
548	194.74	atmosphere	995.0	90	> th	dose independent	rect.	8	20
599	195.14	radiation	40.0	270	< th	dose dependent	rect.	15	15
650	195.55	humidity	50.0	270	> th	dose dependent	rect.	4	1
713	196.15	humidity	60.0	90	> th	dose dependent	rect.	4	15
732	196.26	humidity	60.0	90	> th	dose dependent	rect.	4	17
740	196.32	radiation	1.0	270	< th	dose dependent	sin	1	NA
746	196.39	temperature	15.0	10	> th	dose dependent	rect.	8	13
825	196.84	humidity	50.0	90	> th	dose dependent	rect.	4	4
841	196.97	wind	7.0	270	< th	dose independent	rect.	6	10
852	197.12	radiation	1.0	270	< th	dose independent	sin	2	NA
868	197.21	temperature	10.0	90	> th	dose dependent	rect.	4	4
869	197.23	atmosphere	1005.0	270	> th	dose independent	rect.	4	1
934	197.66	wind	9.0	270	< th	dose dependent	rect.	7	8
943	197.74	radiation	20.0	270	< th	dose independent	rect.	15	15