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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0429700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C2 calcium/lipid-binding region, CaLB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.92 (0.0393) R2 : 0.281
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.82 (0.137) R2dE : 0.291 R2E : 0.257
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.279 (0.084) R2dN8 : 0.0234 R2N8 : -0.00995
σ : 0.736
deviance : 249.59
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C
peak time of C : --
E
wheather : temperature
threshold : 22.91
memory length : 602
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
237.57 0.724 3.85 0.893 0.559 1.32 0.172 2.04 -0.0666 16.8 22.8 826 -- --
239.47 0.721 3.9 0.444 0.568 1.5 0.248 -- -0.146 16.7 23.82 857 -- --
237.62 0.718 3.85 0.901 0.566 1.32 -- 2.07 -0.0668 16.7 22.76 830 -- --
239.46 0.721 3.9 0.448 0.532 1.54 -- -- -0.15 16.3 23.87 837 -- --
243.87 0.727 3.87 0.776 -- 1.59 -- 1.86 -0.139 -- 22.8 600 -- --
287.4 0.795 3.87 0.861 0.81 -- 1.61 -- 0.0382 19.1 -- -- -- --
293.43 0.802 3.87 0.833 0.829 -- -- -- 0.0442 18.6 -- -- -- --
244.88 0.729 3.9 0.441 -- 1.73 -- -- -0.199 -- 23.36 600 -- --
244.29 0.728 3.91 -- 0.545 1.65 -- -- -0.215 16.2 23.61 853 -- --
329.2 0.848 3.85 0.813 -- -- -- -- 0.0273 -- -- -- -- --
311.7 0.826 3.89 -- 0.818 -- -- -- -0.0486 18.6 -- -- -- --
249.59 0.736 3.92 -- -- 1.82 -- -- -0.279 -- 22.91 602 -- --
346.62 0.869 3.87 -- -- -- -- -- -0.0629 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 230.76 temperature 10 720 > th dose dependent rect. 9 15
2 230.82 temperature 10 720 > th dose dependent rect. 11 13
25 232.50 temperature 10 720 > th dose dependent rect. 12 9
39 233.01 temperature 20 720 > th dose dependent sin 21 NA
47 233.22 temperature 30 720 < th dose dependent rect. 8 14
61 233.54 temperature 20 720 > th dose dependent rect. 4 19
62 233.55 temperature 10 720 > th dose dependent rect. 3 21
72 233.72 temperature 30 720 < th dose dependent rect. 9 12
121 234.61 temperature 30 720 < th dose dependent sin 21 NA
130 234.85 temperature 30 720 < th dose dependent rect. 8 18
220 236.59 temperature 25 720 > th dose dependent rect. 18 21
224 236.66 temperature 10 720 > th dose dependent rect. 11 18
273 237.49 temperature 25 720 > th dose dependent rect. 12 2
391 238.44 temperature 30 1440 < th dose dependent rect. 17 2
396 238.44 temperature 30 270 < th dose dependent rect. 11 22
410 238.51 temperature 10 1440 > th dose dependent rect. 12 2
551 239.05 temperature 30 720 < th dose dependent rect. 14 6
571 239.11 temperature 30 270 < th dose dependent rect. 9 22
600 239.20 temperature 15 90 > th dose dependent rect. 2 23
602 239.21 temperature 20 30 > th dose dependent rect. 7 23
615 239.25 temperature 30 1440 < th dose independent rect. 11 4
618 239.25 temperature 25 1440 > th dose dependent rect. 8 7
761 239.61 temperature 30 1440 > th dose independent rect. 11 4
778 239.63 temperature 25 1440 > th dose dependent rect. 23 16
851 239.75 temperature 20 4320 > th dose dependent rect. 17 1