Os05g0429600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0429600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.55 | 0.592 | 5.89 | 0.379 | 3.16 | -1.62 | -0.485 | 2.16 | 0.0687 | 16.4 | 18.9 | 554 | -- | -- |
| 161.96 | 0.593 | 5.93 | 0.0321 | 3.24 | -1.55 | -0.113 | -- | -0.0308 | 16.3 | 18.55 | 468 | -- | -- |
| 159.15 | 0.588 | 5.89 | 0.349 | 3.16 | -1.63 | -- | 2.01 | 0.0701 | 16.4 | 19 | 555 | -- | -- |
| 161.57 | 0.592 | 5.94 | -0.0435 | 3.2 | -1.59 | -- | -- | -0.0518 | 16.4 | 18 | 484 | -- | -- |
| 528.72 | 1.07 | 5.85 | 0.688 | -- | -1.8 | -- | 2.8 | 0.0497 | -- | 23.8 | 1203 | -- | -- |
| 200.73 | 0.664 | 5.99 | -0.452 | 2.77 | -- | -0.54 | -- | -0.325 | 16 | -- | -- | -- | -- |
| 201.57 | 0.665 | 5.99 | -0.459 | 2.77 | -- | -- | -- | -0.328 | 16 | -- | -- | -- | -- |
| 533.88 | 1.08 | 5.89 | 0.0129 | -- | -1.7 | -- | -- | -0.0181 | -- | 20.38 | 1184 | -- | -- |
| 161.61 | 0.592 | 5.94 | -- | 3.22 | -1.64 | -- | -- | -0.0404 | 16.3 | 17.82 | 469 | -- | -- |
| 621.41 | 1.16 | 5.98 | -0.573 | -- | -- | -- | -- | -0.402 | -- | -- | -- | -- | -- |
| 207.13 | 0.673 | 5.98 | -- | 2.78 | -- | -- | -- | -0.277 | 16 | -- | -- | -- | -- |
| 533.89 | 1.08 | 5.89 | -- | -- | -1.7 | -- | -- | -0.0239 | -- | 20.38 | 1185 | -- | -- |
| 630.06 | 1.17 | 5.96 | -- | -- | -- | -- | -- | -0.338 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 6 | 144.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 13 |
| 7 | 144.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 11 | 145.17 | temperature | 20 | 90 | > th | dose independent | rect. | 12 | 19 |
| 25 | 148.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 27 | 148.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 39 | 149.03 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 14 |
| 59 | 150.28 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 15 |
| 77 | 151.01 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 12 |
| 81 | 151.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 104 | 152.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 14 |
| 117 | 152.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 134 | 153.04 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 11 |
| 142 | 153.31 | temperature | 30 | 90 | < th | dose independent | rect. | 7 | 21 |
| 159 | 153.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 178 | 154.00 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 187 | 154.18 | temperature | 10 | 10 | > th | dose dependent | sin | 12 | NA |
| 192 | 154.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 217 | 154.91 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 271 | 155.72 | temperature | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 290 | 155.88 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 4 |
| 292 | 155.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 6 |
| 300 | 155.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 11 |
| 317 | 156.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 15 |
| 346 | 156.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 356 | 156.61 | temperature | 15 | 10 | > th | dose dependent | rect. | 19 | 12 |
| 374 | 156.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 431 | 157.31 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 2 |
| 433 | 157.34 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 535 | 158.24 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 14 |
| 567 | 158.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 652 | 159.09 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 5 |
| 677 | 159.25 | temperature | 30 | 10 | < th | dose dependent | sin | 12 | NA |
| 760 | 159.80 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 919 | 160.66 | temperature | 10 | 90 | > th | dose dependent | rect. | 4 | 18 |
| 957 | 160.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 2 |