Os05g0428600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HSP70 precursor.
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Os05g0428600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HSP70 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.97 | 0.297 | 2.94 | -0.0204 | 0.0264 | 0.0575 | -0.0726 | 0.537 | -0.0058 | 14.3 | 55 | 5707 | -- | -- |
| 40.38 | 0.296 | 2.94 | -0.0144 | 0.0163 | 0.0886 | -0.106 | -- | 0.00176 | 13.8 | 42 | 5641 | -- | -- |
| 39.97 | 0.294 | 2.94 | -0.0183 | 0.0303 | 0.0604 | -- | 0.533 | -0.00535 | 16.1 | 55.91 | 5703 | -- | -- |
| 40.21 | 0.295 | 2.94 | -0.0305 | 0.0333 | 0.167 | -- | -- | 0.00707 | 13.9 | 50 | 5119 | -- | -- |
| 40.03 | 0.295 | 2.94 | -0.0223 | -- | 0.0567 | -- | 0.533 | -0.00602 | -- | 55.43 | 5692 | -- | -- |
| 40.67 | 0.299 | 2.94 | 0.0205 | 0.00715 | -- | 0.127 | -- | -0.00859 | 21.4 | -- | -- | -- | -- |
| 40.69 | 0.299 | 2.94 | 0.017 | 0.028 | -- | -- | -- | -0.00804 | 16.7 | -- | -- | -- | -- |
| 40.21 | 0.295 | 2.94 | -0.0387 | -- | 0.211 | -- | -- | 0.000337 | -- | 50 | 5099 | -- | -- |
| 40.21 | 0.295 | 2.94 | -- | 0.0356 | 0.185 | -- | -- | 0.00306 | 15.7 | 49 | 5119 | -- | -- |
| 40.73 | 0.298 | 2.94 | 0.0159 | -- | -- | -- | -- | -0.00877 | -- | -- | -- | -- | -- |
| 40.7 | 0.298 | 2.94 | -- | 0.0277 | -- | -- | -- | -0.00993 | 16.7 | -- | -- | -- | -- |
| 40.23 | 0.295 | 2.94 | -- | -- | 0.216 | -- | -- | 0.00544 | -- | 48.41 | 5097 | -- | -- |
| 40.74 | 0.298 | 2.94 | -- | -- | -- | -- | -- | -0.0105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.25 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 2 |
| 2 | 38.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 3 | 38.76 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 16 |
| 5 | 38.78 | humidity | 60 | 90 | < th | dose dependent | rect. | 18 | 16 |
| 12 | 38.92 | humidity | 70 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 28 | 39.14 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 32 | 39.18 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 45 | 39.18 | humidity | 60 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 60 | 39.19 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 142 | 39.20 | humidity | 60 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 147 | 39.21 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 190 | 39.23 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 191 | 39.23 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 298 | 39.25 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 338 | 39.25 | radiation | 40 | 10 | > th | dose dependent | sin | 12 | NA |
| 364 | 39.29 | humidity | 70 | 30 | < th | dose independent | rect. | 19 | 1 |
| 402 | 39.30 | radiation | 30 | 30 | > th | dose dependent | rect. | 14 | 20 |
| 471 | 39.34 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 545 | 39.38 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 593 | 39.41 | radiation | 1 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 838 | 39.58 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 19 | 1 |
| 855 | 39.59 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 6 |
| 891 | 39.60 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 895 | 39.60 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 16 | 5 |
| 912 | 39.60 | wind | 1 | 10 | < th | dose dependent | sin | 21 | NA |
| 919 | 39.61 | wind | 1 | 10 | < th | dose independent | sin | 21 | NA |
| 922 | 39.61 | radiation | 30 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 985 | 39.63 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 7 |