Os05g0426000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MtN3 and saliva related transmembrane protein family protein.
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Os05g0426000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MtN3 and saliva related transmembrane protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.74 | 0.398 | 13.9 | 0.904 | 1.41 | -1.47 | 0.144 | -0.555 | 0.0926 | 4.54 | 25.07 | 379 | -- | -- |
| 71.83 | 0.395 | 13.9 | 0.975 | 1.4 | -1.51 | 0.216 | -- | 0.11 | 4.52 | 25.13 | 388 | -- | -- |
| 71.79 | 0.395 | 13.9 | 0.884 | 1.41 | -1.46 | -- | -0.717 | 0.0878 | 4.54 | 25.05 | 379 | -- | -- |
| 71.95 | 0.395 | 13.9 | 0.978 | 1.39 | -1.54 | -- | -- | 0.11 | 4.53 | 25.1 | 379 | -- | -- |
| 131.47 | 0.534 | 13.9 | 1.38 | -- | -2.8 | -- | 1.13 | 0.323 | -- | 24.5 | 294 | -- | -- |
| 111 | 0.494 | 13.9 | 0.718 | 2.08 | -- | 0.937 | -- | -0.00257 | 4.91 | -- | -- | -- | -- |
| 113.25 | 0.498 | 13.9 | 0.715 | 2.09 | -- | -- | -- | -0.00726 | 4.9 | -- | -- | -- | -- |
| 132.63 | 0.536 | 13.9 | 1.22 | -- | -2.71 | -- | -- | 0.285 | -- | 24.5 | 294 | -- | -- |
| 95.71 | 0.456 | 13.9 | -- | 1.56 | -1.31 | -- | -- | -0.0842 | 4.65 | 26.12 | 374 | -- | -- |
| 343.14 | 0.866 | 13.9 | 0.792 | -- | -- | -- | -- | 0.0466 | -- | -- | -- | -- | -- |
| 126.72 | 0.527 | 13.9 | -- | 2.1 | -- | -- | -- | -0.0869 | 4.89 | -- | -- | -- | -- |
| 171.13 | 0.609 | 13.9 | -- | -- | -2.54 | -- | -- | 0.126 | -- | 24.61 | 294 | -- | -- |
| 359.68 | 0.885 | 14 | -- | -- | -- | -- | -- | -0.0413 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 2 | 67.63 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 7 | 68.56 | temperature | 15 | 270 | > th | dose dependent | sin | 21 | NA |
| 35 | 70.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 46 | 70.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 13 |
| 62 | 71.51 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 71 | 71.81 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 88 | 72.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 98 | 72.51 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 15 |
| 107 | 72.58 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 118 | 72.75 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 12 |
| 140 | 73.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 13 |
| 141 | 73.00 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 144 | 73.03 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 162 | 73.12 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 166 | 73.14 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 253 | 73.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 342 | 74.12 | radiation | 1 | 270 | > th | dose dependent | sin | 13 | NA |
| 351 | 74.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 369 | 74.31 | temperature | 30 | 270 | < th | dose dependent | sin | 20 | NA |
| 376 | 74.33 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 2 |
| 384 | 74.39 | radiation | 10 | 270 | > th | dose independent | sin | 13 | NA |
| 391 | 74.40 | temperature | 30 | 30 | < th | dose dependent | sin | 18 | NA |
| 442 | 74.70 | temperature | 25 | 720 | > th | dose dependent | sin | 3 | NA |
| 457 | 74.81 | radiation | 40 | 270 | < th | dose dependent | sin | 13 | NA |
| 463 | 74.84 | temperature | 15 | 720 | > th | dose dependent | sin | 1 | NA |
| 509 | 75.16 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 20 |
| 527 | 75.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 555 | 75.54 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 20 |
| 601 | 75.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 609 | 75.89 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 707 | 76.31 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 739 | 76.43 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 20 |
| 742 | 76.44 | radiation | 20 | 270 | > th | dose independent | rect. | 15 | 17 |
| 749 | 76.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 752 | 76.48 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 4 |
| 765 | 76.54 | radiation | 20 | 270 | > th | dose independent | rect. | 15 | 2 |
| 783 | 76.58 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 12 |
| 794 | 76.61 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 12 |
| 836 | 76.73 | radiation | 20 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 867 | 76.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 5 |
| 999 | 77.26 | humidity | 50 | 270 | > th | dose dependent | rect. | 10 | 12 |