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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0424900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF630 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0165) R2 : 0.0118
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0813 (0.0348) R2dN8 : 0.0153 R2N8 : 0.0118
σ : 0.312
deviance : 44.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.7 0.303 2.82 0.305 0.0608 0.359 0.454 0.102 0.178 6.95 23.48 5198 -- --
41.71 0.301 2.82 0.327 0.0654 0.357 0.442 -- 0.181 6.97 23.1 5672 -- --
42.19 0.303 2.83 0.33 0.0684 0.425 -- 0.191 0.177 6.33 22.61 5682 -- --
42.21 0.303 2.82 0.336 0.0672 0.361 -- -- 0.18 6.38 22.97 5667 -- --
42.42 0.303 2.83 0.33 -- 0.437 -- 0.232 0.178 -- 22.6 5760 -- --
43.18 0.308 2.84 0.143 0.0615 -- 0.463 -- 0.0983 7.08 -- -- -- --
43.74 0.31 2.84 0.152 0.0629 -- -- -- 0.0971 6.83 -- -- -- --
42.45 0.303 2.82 0.331 -- 0.341 -- -- 0.18 -- 23.27 5102 -- --
43.83 0.308 2.84 -- 0.068 0.144 -- -- 0.109 6.16 29.08 2578 -- --
43.95 0.31 2.84 0.153 -- -- -- -- 0.0983 -- -- -- -- --
44.35 0.312 2.84 -- 0.0647 -- -- -- 0.0802 6.68 -- -- -- --
44 0.309 2.84 -- -- 0.165 -- -- 0.114 -- 29.5 1954 -- --
44.57 0.312 2.84 -- -- -- -- -- 0.0813 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.71 atmosphere 1005.0 30 > th dose dependent rect. 2 1
2 39.75 atmosphere 1005.0 30 > th dose independent rect. 2 1
4 39.77 wind 3.0 30 < th dose dependent rect. 2 1
5 39.78 wind 3.0 30 < th dose independent rect. 2 1
6 39.78 temperature 20.0 30 > th dose dependent rect. 2 1
9 39.80 temperature 25.0 30 < th dose independent rect. 2 1
15 39.83 temperature 20.0 30 > th dose independent rect. 2 1
19 39.84 temperature 10.0 30 > th dose independent rect. 2 1
22 39.84 humidity 50.0 30 > th dose independent rect. 2 1
26 39.84 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 39.84 radiation 1.0 30 < th dose independent rect. 2 1
33 39.84 precipitation 0.1 30 < th dose independent rect. 2 1
34 39.84 temperature 10.0 30 > th dose independent rect. 3 23
35 39.84 radiation 1.0 30 < th dose dependent rect. 2 1
40 39.84 precipitation 0.1 30 < th dose dependent rect. 2 1
42 39.86 humidity 50.0 30 > th dose dependent rect. 2 1
48 40.01 temperature 30.0 30 < th dose dependent rect. 2 1
49 40.03 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 40.18 humidity 50.0 720 > th dose independent rect. 3 8
54 40.30 wind 1.0 30 > th dose independent rect. 2 1
59 40.40 wind 5.0 14400 < th dose dependent rect. 21 1
63 40.42 radiation 40.0 720 < th dose independent rect. 15 8
64 40.43 wind 1.0 43200 < th dose dependent rect. 21 16
74 40.47 wind 1.0 43200 < th dose dependent rect. 23 14
79 40.48 temperature 10.0 720 > th dose independent rect. 3 8
80 40.48 atmosphere 995.0 720 > th dose independent rect. 3 8
81 40.48 temperature 10.0 720 > th dose independent rect. 11 16
85 40.49 radiation 40.0 14400 < th dose dependent rect. 23 1
100 40.52 wind 9.0 1440 < th dose independent rect. 23 1
101 40.52 temperature 10.0 1440 > th dose independent rect. 23 1
104 40.52 temperature 30.0 1440 < th dose independent rect. 23 1
108 40.52 humidity 50.0 1440 > th dose independent rect. 23 1
118 40.52 atmosphere 995.0 1440 > th dose independent rect. 23 1
119 40.52 radiation 1.0 1440 < th dose independent rect. 23 1
139 40.52 temperature 10.0 1440 > th dose independent rect. 24 23
143 40.52 radiation 1.0 1440 < th dose dependent rect. 23 1
160 40.54 humidity 90.0 30 < th dose independent rect. 22 1
165 40.55 temperature 25.0 30 > th dose independent rect. 22 1
166 40.55 temperature 20.0 30 > th dose dependent rect. 22 1
173 40.56 atmosphere 1005.0 30 > th dose dependent rect. 22 1
179 40.57 humidity 80.0 30 > th dose independent rect. 22 1
180 40.57 humidity 80.0 43200 < th dose independent rect. 6 3
181 40.57 wind 1.0 43200 < th dose dependent sin 6 NA
183 40.57 wind 1.0 14400 > th dose dependent rect. 21 2
189 40.58 wind 1.0 30 > th dose independent rect. 22 1
190 40.58 wind 3.0 30 < th dose independent rect. 22 1
192 40.58 precipitation 0.1 30 < th dose independent rect. 22 1
193 40.58 wind 9.0 720 < th dose independent rect. 3 8
196 40.58 atmosphere 995.0 30 > th dose dependent rect. 22 1
198 40.58 precipitation 0.1 30 < th dose dependent rect. 22 1
210 40.59 temperature 10.0 30 > th dose independent rect. 22 1
212 40.59 temperature 30.0 30 < th dose independent rect. 22 1
213 40.59 humidity 50.0 30 > th dose independent rect. 22 1
217 40.59 atmosphere 995.0 30 > th dose independent rect. 22 1
218 40.59 atmosphere 1005.0 30 > th dose independent rect. 22 1
219 40.59 atmosphere 1010.0 30 < th dose independent rect. 22 1
221 40.59 radiation 1.0 30 < th dose independent rect. 22 1
226 40.59 temperature 10.0 30 > th dose independent rect. 23 23
227 40.59 wind 5.0 30 < th dose dependent rect. 22 1
230 40.59 radiation 1.0 30 < th dose dependent rect. 22 1
236 40.59 wind 3.0 14400 < th dose dependent rect. 19 6
238 40.59 wind 1.0 43200 < th dose dependent rect. 3 23
242 40.60 wind 9.0 30 < th dose independent rect. 3 23
244 40.60 humidity 50.0 30 > th dose dependent rect. 22 1
251 40.60 wind 1.0 43200 < th dose dependent rect. 8 23
260 40.62 humidity 80.0 43200 > th dose independent rect. 6 3
261 40.62 wind 1.0 14400 > th dose independent rect. 21 7
262 40.62 temperature 10.0 720 > th dose independent rect. 15 8
263 40.62 temperature 10.0 720 > th dose independent rect. 23 16
264 40.62 wind 1.0 43200 < th dose dependent no NA NA
266 40.62 humidity 90.0 30 < th dose dependent rect. 22 1
287 40.64 wind 1.0 30 > th dose dependent rect. 22 1
291 40.64 wind 1.0 43200 < th dose dependent rect. 23 23
311 40.65 wind 1.0 14400 < th dose independent rect. 21 7
312 40.65 atmosphere 1015.0 720 < th dose independent rect. 3 8
313 40.65 wind 1.0 43200 > th dose independent rect. 20 16
317 40.65 atmosphere 1015.0 30 < th dose dependent rect. 22 1
325 40.65 wind 1.0 43200 < th dose dependent rect. 4 8
329 40.65 wind 1.0 43200 < th dose dependent rect. 1 23
349 40.67 wind 1.0 43200 < th dose dependent rect. 6 1
357 40.67 wind 1.0 14400 < th dose dependent rect. 20 9
358 40.67 wind 1.0 14400 < th dose dependent rect. 18 11
368 40.68 humidity 80.0 43200 > th dose independent rect. 7 1
379 40.68 wind 1.0 43200 < th dose independent rect. 19 18
390 40.69 wind 5.0 14400 < th dose dependent sin 13 NA
399 40.69 wind 5.0 14400 < th dose dependent rect. 14 18
402 40.70 radiation 20.0 30 > th dose independent rect. 7 1
435 40.70 wind 1.0 14400 < th dose dependent rect. 15 16
436 40.70 wind 5.0 14400 < th dose dependent rect. 15 16
445 40.71 wind 3.0 14400 > th dose independent rect. 21 1
446 40.71 wind 3.0 14400 < th dose independent rect. 20 2
467 40.72 wind 9.0 720 < th dose independent rect. 15 8
474 40.72 wind 1.0 14400 < th dose dependent sin 12 NA
478 40.72 temperature 30.0 30 < th dose dependent rect. 22 1
479 40.72 humidity 90.0 43200 < th dose dependent rect. 6 1
499 40.73 wind 1.0 14400 > th dose independent sin 12 NA
503 40.73 wind 1.0 14400 > th dose independent rect. 19 12
512 40.73 wind 1.0 43200 < th dose dependent rect. 6 3
514 40.73 wind 1.0 43200 < th dose dependent rect. 23 3
535 40.74 wind 1.0 14400 < th dose independent sin 12 NA
547 40.74 wind 1.0 14400 > th dose dependent sin 13 NA
555 40.74 wind 1.0 14400 > th dose dependent rect. 18 7
563 40.74 wind 1.0 14400 > th dose dependent rect. 16 15
623 40.76 wind 1.0 14400 < th dose independent rect. 19 12
628 40.76 wind 9.0 720 < th dose independent rect. 11 16
661 40.77 wind 1.0 43200 < th dose independent rect. 23 3
707 40.78 radiation 1.0 43200 > th dose independent rect. 4 2
708 40.78 radiation 1.0 43200 < th dose independent rect. 4 2
741 40.78 humidity 50.0 43200 > th dose dependent rect. 6 2
766 40.79 wind 1.0 43200 > th dose independent sin 8 NA
853 40.81 wind 5.0 43200 > th dose independent rect. 24 1
872 40.81 wind 1.0 90 < th dose dependent rect. 6 1
913 40.82 humidity 60.0 43200 < th dose independent rect. 12 1
918 40.82 humidity 80.0 43200 > th dose independent rect. 19 5
928 40.82 humidity 80.0 43200 > th dose independent rect. 18 15
940 40.82 radiation 10.0 43200 < th dose dependent rect. 5 1
978 40.83 humidity 60.0 43200 > th dose independent rect. 12 1