Os05g0423500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0423500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.76 | 0.369 | 10.2 | -0.433 | 1.07 | -0.361 | -0.416 | -0.285 | -0.0677 | 0.646 | 88.74 | 138 | -- | -- |
| 62.11 | 0.367 | 10.2 | -0.411 | 1.08 | -0.36 | -0.277 | -- | -0.0699 | 0.605 | 88.18 | 135 | -- | -- |
| 61.91 | 0.366 | 10.2 | -0.408 | 1.1 | -0.365 | -- | -0.13 | -0.0762 | 0.465 | 85.52 | 243 | -- | -- |
| 62 | 0.367 | 10.2 | -0.406 | 1.11 | -0.362 | -- | -- | -0.076 | 0.483 | 85.48 | 245 | -- | -- |
| 100.74 | 0.467 | 10.2 | -0.378 | -- | -0.79 | -- | -0.542 | -0.0891 | -- | 82.23 | 102 | -- | -- |
| 68.19 | 0.387 | 10.2 | -0.352 | 1.27 | -- | -0.099 | -- | -0.126 | 1.27 | -- | -- | -- | -- |
| 68.23 | 0.387 | 10.2 | -0.348 | 1.27 | -- | -- | -- | -0.126 | 1.27 | -- | -- | -- | -- |
| 95.36 | 0.457 | 10.2 | -0.232 | -- | -0.808 | -- | -- | -0.131 | -- | 78 | 91 | -- | -- |
| 66.31 | 0.379 | 10.2 | -- | 1.09 | -0.346 | -- | -- | -0.0489 | 0.575 | 86 | 234 | -- | -- |
| 168.07 | 0.606 | 10.2 | -0.299 | -- | -- | -- | -- | -0.0996 | -- | -- | -- | -- | -- |
| 71.43 | 0.395 | 10.2 | -- | 1.27 | -- | -- | -- | -0.087 | 1.26 | -- | -- | -- | -- |
| 96.38 | 0.457 | 10.2 | -- | -- | -0.801 | -- | -- | -0.108 | -- | 79 | 24 | -- | -- |
| 170.43 | 0.609 | 10.2 | -- | -- | -- | -- | -- | -0.0665 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 3 | 60.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 4 | 60.32 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 7 | 60.35 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 8 | 60.37 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 18 |
| 12 | 60.39 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 32 | 60.48 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 15 | NA |
| 48 | 60.51 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 18 |
| 72 | 60.57 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 86 | 60.59 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 139 | 60.65 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 1 | 18 |
| 145 | 60.65 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 158 | 60.67 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 7 |
| 164 | 60.67 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 23 | 20 |
| 168 | 60.67 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 22 |
| 193 | 60.69 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 195 | 60.70 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 15 | NA |
| 222 | 60.71 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 229 | 60.71 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 1 | 18 |
| 232 | 60.71 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 257 | 60.72 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 261 | 60.73 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 317 | 60.76 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 448 | 60.84 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 0 | NA |
| 496 | 60.86 | humidity | 80 | 270 | > th | dose independent | rect. | 23 | 21 |
| 501 | 60.87 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 8 |
| 556 | 60.91 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 10 | 7 |
| 558 | 60.91 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 567 | 60.92 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 573 | 60.92 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 584 | 60.92 | radiation | 1 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 603 | 60.94 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 640 | 60.96 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 669 | 60.97 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 717 | 61.01 | humidity | 90 | 90 | < th | dose independent | rect. | 20 | 21 |
| 798 | 61.10 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 907 | 61.20 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 922 | 61.21 | humidity | 80 | 270 | < th | dose independent | rect. | 18 | 21 |
| 925 | 61.21 | humidity | 70 | 90 | > th | dose dependent | rect. | 21 | 23 |