Os05g0423400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PISTILLATA-like MADS box protein.
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Os05g0423400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PISTILLATA-like MADS box protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.45 | 0.454 | 5.07 | 1.37 | 0.756 | -1.54 | 0.337 | 1.36 | 0.149 | 3.38 | 24.57 | 4375 | -- | -- |
| 93.47 | 0.45 | 5.08 | 1.12 | 0.782 | -1.4 | 0.401 | -- | 0.201 | 3.36 | 22.89 | 4334 | -- | -- |
| 93.61 | 0.451 | 5.08 | 1.36 | 0.693 | -1.51 | -- | 1.43 | 0.121 | 3.22 | 25.11 | 4623 | -- | -- |
| 93.74 | 0.451 | 5.09 | 1.09 | 0.705 | -1.38 | -- | -- | 0.19 | 3.21 | 22.98 | 4665 | -- | -- |
| 119.47 | 0.509 | 5.08 | 1.46 | -- | -1.52 | -- | 1.87 | 0.108 | -- | 25.85 | 4747 | -- | -- |
| 153.9 | 0.582 | 5.14 | 0.536 | 0.678 | -- | 0.275 | -- | -0.02 | 3.62 | -- | -- | -- | -- |
| 154.13 | 0.581 | 5.14 | 0.532 | 0.679 | -- | -- | -- | -0.0216 | 3.57 | -- | -- | -- | -- |
| 115.78 | 0.503 | 5.09 | 0.834 | -- | -1.6 | -- | -- | 0.217 | -- | 22.98 | 4665 | -- | -- |
| 117.53 | 0.505 | 5.17 | -- | 0.778 | -1.19 | -- | -- | -0.166 | 3.08 | 27.61 | 3464 | -- | -- |
| 179.84 | 0.627 | 5.14 | 0.56 | -- | -- | -- | -- | -0.00352 | -- | -- | -- | -- | -- |
| 161.58 | 0.595 | 5.15 | -- | 0.69 | -- | -- | -- | -0.0808 | 3.56 | -- | -- | -- | -- |
| 133.59 | 0.54 | 5.11 | -- | -- | -1.45 | -- | -- | 0.107 | -- | 22.98 | 4665 | -- | -- |
| 188.12 | 0.64 | 5.15 | -- | -- | -- | -- | -- | -0.0657 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 2 | 91.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 6 |
| 24 | 92.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 30 | 92.51 | temperature | 25 | 4320 | > th | dose dependent | sin | 6 | NA |
| 33 | 92.56 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 15 |
| 88 | 93.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 21 |
| 109 | 93.44 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 144 | 93.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 201 | 93.71 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 208 | 93.72 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 315 | 94.67 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 319 | 94.69 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 333 | 94.83 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 340 | 94.90 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 361 | 95.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 8 |
| 426 | 95.28 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 463 | 95.37 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 558 | 95.54 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 581 | 95.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 667 | 95.85 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 679 | 95.90 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 703 | 96.00 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 707 | 96.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 19 |
| 720 | 96.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 19 |
| 729 | 96.09 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 737 | 96.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 746 | 96.11 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 787 | 96.21 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 802 | 96.25 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 871 | 96.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 18 |
| 938 | 96.47 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 956 | 96.50 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 998 | 96.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |