Os05g0422900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0422900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.68 | 0.334 | 10 | -1.08 | 0.182 | -1.04 | 0.454 | -0.555 | 0.0558 | 1.94 | 25.1 | 79 | -- | -- |
| 51.11 | 0.333 | 10 | -1.14 | 0.158 | -0.983 | 0.298 | -- | 0.047 | 1.97 | 25.25 | 80 | -- | -- |
| 51.27 | 0.333 | 10 | -1.14 | 0.178 | -1 | -- | -0.209 | 0.0432 | 1.99 | 25.1 | 69 | -- | -- |
| 51.34 | 0.334 | 10 | -1.17 | 0.179 | -0.985 | -- | -- | 0.0361 | 2.05 | 25.18 | 69 | -- | -- |
| 52.57 | 0.338 | 10 | -1.11 | -- | -0.94 | -- | -0.27 | 0.0951 | -- | 24.27 | 120 | -- | -- |
| 65.14 | 0.378 | 10 | -0.924 | 0.0134 | -- | -0.258 | -- | 0.235 | 13.2 | -- | -- | -- | -- |
| 65.41 | 0.379 | 10 | -0.933 | 0.014 | -- | -- | -- | 0.234 | 12.2 | -- | -- | -- | -- |
| 52.67 | 0.338 | 10 | -1.14 | -- | -0.901 | -- | -- | 0.0834 | -- | 24.4 | 116 | -- | -- |
| 83.73 | 0.428 | 10 | -- | 0.0797 | -0.531 | -- | -- | 0.244 | 1.13 | 25.2 | 38 | -- | -- |
| 65.42 | 0.378 | 10 | -0.934 | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
| 88.37 | 0.44 | 9.98 | -- | 0.03 | -- | -- | -- | 0.338 | 14 | -- | -- | -- | -- |
| 84.07 | 0.428 | 10 | -- | -- | -0.478 | -- | -- | 0.255 | -- | 25.2 | 38 | -- | -- |
| 88.42 | 0.439 | 9.98 | -- | -- | -- | -- | -- | 0.337 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.52 | temperature | 25 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 2 | 50.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 4 | 50.62 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 5 | 50.63 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 8 | 50.67 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 9 | 50.72 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 10 | 50.73 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 26 | 50.82 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 27 | 50.82 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 29 | 50.83 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 30 | 50.83 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 32 | 50.84 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 40 | 50.88 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 41 | 50.90 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 81 | 51.55 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 23 |
| 102 | 51.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 149 | 52.01 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 21 |
| 340 | 53.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 406 | 53.64 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 465 | 53.87 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 493 | 53.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 503 | 53.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 543 | 54.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 547 | 54.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 555 | 54.12 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 23 |
| 557 | 54.12 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 23 |
| 558 | 54.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 587 | 54.19 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 695 | 54.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 811 | 54.66 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 11 |
| 844 | 54.70 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 881 | 54.74 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 10 |
| 918 | 54.79 | temperature | 20 | 10 | < th | dose independent | rect. | 11 | 20 |
| 968 | 54.84 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 22 |
| 999 | 54.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 1000 | 54.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 22 |