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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0422200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0374) R2 : 0.154
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.866 (0.0991) R2dE : 0.166 R2E : 0.0789
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.435 (0.083) R2dN8 : 0.0747 R2N8 : -0.0127
σ : 0.691
deviance : 220.06
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.3
memory length : 844
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
210.39 0.681 3.28 0.236 0.349 -0.825 -0.541 0.0577 0.452 12.5 22.29 809 -- --
210.39 0.676 3.28 0.217 0.35 -0.825 -0.555 -- 0.448 12.6 22.3 801 -- --
211.44 0.677 3.28 0.279 0.348 -0.824 -- 0.254 0.464 12.1 22.25 838 -- --
211.64 0.678 3.28 0.194 0.353 -0.821 -- -- 0.443 12.2 22.28 801 -- --
218.71 0.689 3.27 0.309 -- -0.914 -- 0.276 0.496 -- 22.2 844 -- --
240.44 0.727 3.34 -0.0519 0.502 -- -0.496 -- 0.169 11.8 -- -- -- --
241.47 0.728 3.34 -0.0727 0.505 -- -- -- 0.166 11.6 -- -- -- --
218.91 0.689 3.28 0.215 -- -0.913 -- -- 0.469 -- 22.2 841 -- --
212.58 0.679 3.29 -- 0.357 -0.786 -- -- 0.411 12.1 22.3 801 -- --
257.49 0.75 3.35 -0.0866 -- -- -- -- 0.161 -- -- -- -- --
241.61 0.727 3.34 -- 0.506 -- -- -- 0.175 11.6 -- -- -- --
220.06 0.691 3.29 -- -- -0.866 -- -- 0.435 -- 22.3 844 -- --
257.69 0.749 3.35 -- -- -- -- -- 0.17 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.72 temperature 15 720 > th dose dependent rect. 20 14
6 203.23 temperature 30 720 < th dose dependent rect. 23 9
9 203.40 temperature 30 720 < th dose dependent rect. 20 15
10 203.47 temperature 15 720 > th dose dependent rect. 21 11
13 203.53 temperature 30 720 < th dose dependent rect. 21 12
15 203.68 temperature 25 720 < th dose dependent rect. 1 1
21 203.85 temperature 30 720 < th dose dependent sin 9 NA
23 203.92 temperature 15 720 > th dose dependent sin 9 NA
73 205.25 wind 9 43200 > th dose dependent rect. 18 14
100 205.91 temperature 10 720 > th dose dependent rect. 20 18
102 205.96 wind 9 43200 > th dose independent rect. 18 14
146 206.60 wind 9 43200 < th dose independent rect. 18 15
203 207.40 temperature 10 720 > th dose dependent rect. 2 7
206 207.43 temperature 20 720 > th dose independent rect. 21 11
276 208.21 wind 9 43200 > th dose dependent rect. 18 9
281 208.24 wind 9 43200 > th dose dependent rect. 18 6
300 208.49 wind 9 43200 > th dose independent rect. 18 6
308 208.53 wind 9 43200 > th dose independent rect. 18 9
351 208.95 wind 9 43200 < th dose independent rect. 18 6
362 209.10 temperature 20 720 > th dose independent sin 9 NA
368 209.15 temperature 20 720 < th dose independent rect. 24 8
383 209.30 wind 9 43200 > th dose dependent sin 12 NA
433 209.66 wind 9 43200 > th dose independent sin 11 NA
449 209.78 temperature 20 720 > th dose independent rect. 20 18
453 209.81 wind 7 43200 > th dose dependent rect. 16 18
495 210.21 temperature 20 720 < th dose independent rect. 21 11
520 210.45 temperature 20 720 < th dose independent rect. 1 1
539 210.55 wind 9 43200 < th dose independent sin 11 NA
549 210.63 wind 7 43200 > th dose dependent rect. 14 21
562 210.70 temperature 20 720 < th dose independent sin 8 NA
569 210.72 wind 9 43200 > th dose dependent rect. 14 19
596 210.93 wind 9 43200 > th dose independent rect. 14 20
621 211.17 wind 9 43200 < th dose independent rect. 14 20
649 211.36 temperature 25 720 < th dose dependent rect. 3 5
672 211.53 temperature 20 720 < th dose independent rect. 5 2
715 211.77 temperature 15 1440 > th dose dependent rect. 2 1
741 211.86 temperature 20 1440 > th dose dependent rect. 6 3
755 211.92 humidity 90 43200 < th dose independent rect. 7 1
765 211.96 wind 9 43200 > th dose dependent rect. 18 4
777 212.01 temperature 20 1440 > th dose dependent rect. 21 1
800 212.09 radiation 30 4320 < th dose independent rect. 7 1
824 212.16 humidity 90 43200 > th dose independent rect. 6 1
830 212.17 temperature 20 1440 > th dose independent rect. 21 2
851 212.21 humidity 90 43200 < th dose independent rect. 4 7
858 212.23 humidity 80 43200 > th dose independent rect. 9 2
861 212.23 humidity 70 43200 > th dose dependent rect. 10 1
887 212.28 wind 7 43200 > th dose independent rect. 6 2
904 212.32 wind 7 43200 < th dose independent rect. 6 2
971 212.42 temperature 25 1440 < th dose dependent rect. 21 2
986 212.45 humidity 80 43200 > th dose dependent rect. 5 7
994 212.46 humidity 80 43200 > th dose dependent rect. 4 9
999 212.47 wind 9 43200 > th dose dependent sin 18 NA