Os05g0421000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os05g0421000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.12 | 0.591 | 4.06 | -1.29 | 1.37 | 1.72 | -0.478 | -1.33 | -0.254 | 18.1 | 25.03 | 1111 | -- | -- |
| 158.61 | 0.587 | 4.03 | -0.989 | 1.34 | 1.63 | -0.502 | -- | -0.186 | 18.1 | 24.89 | 1080 | -- | -- |
| 158.65 | 0.587 | 4.07 | -1.3 | 1.38 | 1.72 | -- | -1.39 | -0.26 | 18.1 | 25.02 | 1117 | -- | -- |
| 159.27 | 0.588 | 4.03 | -0.975 | 1.36 | 1.62 | -- | -- | -0.188 | 18.1 | 24.89 | 1095 | -- | -- |
| 224.98 | 0.699 | 4.09 | -1.97 | -- | 2.28 | -- | -3.62 | -0.421 | -- | 25.29 | 2013 | -- | -- |
| 237.94 | 0.723 | 4 | -0.519 | 1.43 | -- | -0.181 | -- | -0.0165 | 19.1 | -- | -- | -- | -- |
| 238.03 | 0.722 | 4 | -0.516 | 1.43 | -- | -- | -- | -0.017 | 19.1 | -- | -- | -- | -- |
| 183.1 | 0.63 | 4.04 | -1.06 | -- | 2.41 | -- | -- | -0.368 | -- | 23.2 | 591 | -- | -- |
| 181.94 | 0.628 | 3.98 | -- | 1.38 | 1.3 | -- | -- | 0.0494 | 18.4 | 26.57 | 1096 | -- | -- |
| 346.14 | 0.869 | 3.97 | -0.544 | -- | -- | -- | -- | -0.0427 | -- | -- | -- | -- | -- |
| 245.05 | 0.732 | 3.99 | -- | 1.44 | -- | -- | -- | 0.0404 | 19.1 | -- | -- | -- | -- |
| 210.89 | 0.676 | 4 | -- | -- | 2.24 | -- | -- | -0.166 | -- | 23.87 | 582 | -- | -- |
| 353.94 | 0.878 | 3.95 | -- | -- | -- | -- | -- | 0.0176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 3 | 156.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 23 | 156.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 58 | 156.96 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 137 | 157.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 154 | 157.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 17 |
| 206 | 157.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 244 | 158.15 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 454 | 159.05 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 499 | 159.17 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 666 | 159.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 725 | 159.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 730 | 159.72 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 795 | 159.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |