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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0420900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.82 (0.0459) R2 : 0.328
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.21 (0.115) R2dC : 0.168 R2C : 0.177
β3 : 2.23 (0.252) R2dE : 0.114 R2E : 0.129
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.351 (0.097) R2dN8 : 0.0244 R2N8 : 0.0301
σ : 0.858
deviance : 339.67
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_____
C
peak time of C : 20.8
E
wheather : radiation
threshold : 0.07483
memory length : 2055
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.8
open length of G : 1.98

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
332.22 0.856 3.99 0.256 1.23 6.1 -0.498 11.5 -0.381 20.9 0.8302 2169 13 0.883
346.89 0.867 3.82 -0.095 1.19 2.11 -0.875 -- -0.34 21 0.6265 1939 13.1 2.45
332.86 0.85 3.99 0.3 1.23 6.09 -- 11.3 -0.372 20.8 0.9268 2140 13 0.85
339.75 0.858 3.82 -0.00674 1.19 2.2 -- -- -0.351 20.7 5.458e-05 2055 12.8 1.98
419.06 0.953 3.95 0.363 -- 6.26 -- 11.2 -0.359 -- 0.8322 2168 13.1 0.8
384.54 0.919 3.85 -0.64 1.26 -- -0.78 -- -0.518 21 -- -- -- --
386.57 0.921 3.85 -0.611 1.27 -- -- -- -0.516 20.9 -- -- -- --
423.09 0.958 3.79 0.11 -- 2.31 -- -- -0.324 -- 1.965 2059 12.8 1.98
339.67 0.858 3.82 -- 1.21 2.23 -- -- -0.351 20.8 0.07483 2055 12.8 1.98
478.72 1.02 3.82 -0.611 -- -- -- -- -0.525 -- -- -- -- --
396.43 0.931 3.84 -- 1.27 -- -- -- -0.448 20.9 -- -- -- --
422.3 0.957 3.79 -- -- 2.36 -- -- -0.344 -- 1.992 2108 12.9 1.93
488.57 1.03 3.8 -- -- -- -- -- -0.457 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 333.67 radiation 1 1440 > th dose independent rect. 12 2
2 334.08 radiation 1 1440 < th dose independent rect. 13 1
3 334.08 radiation 1 1440 < th dose dependent rect. 13 1
6 334.44 radiation 1 1440 < th dose independent rect. 9 5
7 334.44 radiation 1 1440 < th dose dependent rect. 9 5
16 335.08 radiation 1 1440 > th dose independent rect. 8 6
64 341.14 atmosphere 1005 720 < th dose independent rect. 19 6
66 341.37 atmosphere 1005 720 < th dose independent rect. 20 3
84 343.97 humidity 80 1440 < th dose independent rect. 7 8
93 344.52 humidity 80 1440 < th dose independent rect. 2 13
112 345.35 humidity 80 1440 > th dose independent rect. 2 14
115 345.43 humidity 80 1440 > th dose independent rect. 6 10
144 345.93 humidity 80 1440 < th dose independent sin 4 NA
148 346.01 atmosphere 1005 270 < th dose independent rect. 18 14
152 346.08 humidity 80 1440 < th dose independent rect. 21 17
183 346.96 humidity 80 1440 > th dose independent sin 3 NA
192 347.20 atmosphere 1005 720 < th dose independent sin 14 NA
245 348.96 atmosphere 1005 90 < th dose dependent rect. 23 11
251 349.04 atmosphere 1005 10 < th dose dependent rect. 24 10
253 349.08 atmosphere 1005 270 < th dose independent sin 11 NA
255 349.12 atmosphere 1005 90 < th dose dependent rect. 24 9
267 349.47 humidity 60 720 > th dose dependent rect. 19 5
283 349.80 humidity 80 1440 > th dose independent rect. 11 3
309 350.27 humidity 80 1440 < th dose independent rect. 11 3
315 350.35 radiation 1 1440 > th dose independent rect. 9 1
334 350.72 atmosphere 1005 30 < th dose dependent rect. 21 13
368 351.21 humidity 90 720 > th dose dependent rect. 20 4
410 351.83 humidity 60 14400 > th dose independent rect. 24 8
415 351.90 humidity 90 720 > th dose dependent rect. 22 1
444 352.37 humidity 60 14400 < th dose independent rect. 6 1
446 352.37 humidity 60 14400 < th dose independent rect. 20 1
448 352.37 radiation 20 14400 > th dose independent rect. 17 1
499 352.37 humidity 60 14400 < th dose dependent rect. 6 1
501 352.37 humidity 60 14400 < th dose dependent rect. 20 1
503 352.37 radiation 20 14400 > th dose dependent rect. 17 1
621 353.43 humidity 60 14400 > th dose independent rect. 21 11
638 353.89 radiation 1 720 < th dose independent rect. 11 13
675 354.32 humidity 60 14400 > th dose independent rect. 21 1
708 354.84 radiation 1 1440 > th dose independent rect. 11 19
739 355.37 humidity 80 14400 < th dose dependent rect. 6 1
740 355.38 radiation 1 720 < th dose dependent rect. 11 13
743 355.40 radiation 1 1440 < th dose independent rect. 11 19
900 356.40 radiation 1 1440 < th dose independent rect. 11 10
913 356.48 humidity 60 90 > th dose dependent rect. 21 13
919 356.52 atmosphere 995 43200 < th dose dependent rect. 13 13
948 356.71 humidity 50 720 > th dose dependent rect. 19 12
953 356.78 atmosphere 995 43200 < th dose dependent rect. 14 10
962 356.86 wind 7 4320 < th dose independent rect. 15 4
966 356.88 wind 7 4320 > th dose independent rect. 15 4
985 357.06 humidity 90 14400 < th dose dependent rect. 2 5