Os05g0420000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0420000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.99 | 0.525 | 10.7 | 0.689 | 2.12 | -1.27 | -0.633 | 1.57 | 0.266 | 21.4 | 81.95 | 1328 | -- | -- |
| 128.05 | 0.527 | 10.7 | 0.564 | 2.14 | -1.2 | -0.551 | -- | 0.258 | 21.4 | 85.31 | 1318 | -- | -- |
| 126.42 | 0.524 | 10.7 | 0.705 | 2.12 | -1.26 | -- | 1.51 | 0.268 | 21.4 | 82 | 1324 | -- | -- |
| 128.97 | 0.529 | 10.7 | 0.535 | 2.16 | -1.18 | -- | -- | 0.263 | 21.4 | 85.01 | 1275 | -- | -- |
| 366.07 | 0.896 | 10.7 | 0.426 | -- | -1.2 | -- | 2.47 | 0.215 | -- | 85 | 1470 | -- | -- |
| 158.71 | 0.591 | 10.7 | 0.363 | 2.08 | -- | -0.643 | -- | 0.276 | 21.2 | -- | -- | -- | -- |
| 160.14 | 0.593 | 10.7 | 0.386 | 2.09 | -- | -- | -- | 0.277 | 21.1 | -- | -- | -- | -- |
| 376.72 | 0.908 | 10.7 | 0.413 | -- | -1.13 | -- | -- | 0.224 | -- | 86 | 1476 | -- | -- |
| 136.32 | 0.544 | 10.7 | -- | 2.21 | -1.16 | -- | -- | 0.221 | 21.5 | 87.72 | 1225 | -- | -- |
| 411.53 | 0.948 | 10.7 | 0.392 | -- | -- | -- | -- | 0.266 | -- | -- | -- | -- | -- |
| 164.08 | 0.599 | 10.7 | -- | 2.09 | -- | -- | -- | 0.234 | 21.1 | -- | -- | -- | -- |
| 380.72 | 0.912 | 10.7 | -- | -- | -1.11 | -- | -- | 0.199 | -- | 89 | 1482 | -- | -- |
| 415.57 | 0.952 | 10.7 | -- | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.67 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 16 | 114.98 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 13 |
| 37 | 115.85 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 55 | 117.16 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 87 | 118.99 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 17 |
| 91 | 119.14 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 92 | 119.16 | humidity | 80 | 1440 | < th | dose dependent | sin | 6 | NA |
| 141 | 120.48 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 159 | 120.92 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 200 | 121.74 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 229 | 122.22 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 252 | 122.57 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 338 | 123.71 | humidity | 50 | 1440 | > th | dose dependent | rect. | 5 | 10 |
| 441 | 124.67 | humidity | 50 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 452 | 124.81 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 19 |
| 488 | 125.13 | humidity | 60 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 489 | 125.14 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 529 | 125.44 | humidity | 50 | 1440 | > th | dose dependent | sin | 2 | NA |
| 540 | 125.51 | humidity | 50 | 720 | > th | dose dependent | sin | 18 | NA |
| 562 | 125.67 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 570 | 125.72 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 587 | 125.84 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 640 | 126.15 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 14 |
| 651 | 126.22 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 664 | 126.30 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 17 |
| 729 | 126.64 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 817 | 126.98 | humidity | 70 | 720 | > th | dose independent | sin | 18 | NA |
| 866 | 127.14 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 874 | 127.16 | humidity | 80 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 924 | 127.26 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 938 | 127.30 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |