Os05g0418800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CUC2.
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Os05g0418800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CUC2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.17 | 0.358 | 9.38 | 2.73 | 0.428 | 1.22 | 0.139 | -0.87 | 0.34 | 6.52 | 29.73 | 258 | -- | -- |
| 59.05 | 0.358 | 9.39 | 2.63 | 0.4 | 1.27 | 0.0353 | -- | 0.337 | 6.53 | 29.56 | 260 | -- | -- |
| 58.22 | 0.355 | 9.38 | 2.72 | 0.426 | 1.22 | -- | -0.802 | 0.338 | 6.55 | 29.73 | 258 | -- | -- |
| 58.89 | 0.357 | 9.4 | 2.58 | 0.442 | 1.22 | -- | -- | 0.301 | 6.85 | 29.54 | 219 | -- | -- |
| 65.07 | 0.376 | 9.38 | 2.82 | -- | 1.6 | -- | -0.896 | 0.397 | -- | 30.77 | 315 | -- | -- |
| 79.02 | 0.417 | 9.45 | 2.27 | 0.767 | -- | 0.0698 | -- | 0.0524 | 5.55 | -- | -- | -- | -- |
| 79.03 | 0.416 | 9.45 | 2.27 | 0.768 | -- | -- | -- | 0.0521 | 5.54 | -- | -- | -- | -- |
| 65.83 | 0.378 | 9.39 | 2.66 | -- | 1.56 | -- | -- | 0.369 | -- | 30.19 | 311 | -- | -- |
| 214.51 | 0.686 | 9.5 | -- | 0.779 | 0.141 | -- | -- | -0.184 | 5.57 | 49.58 | 27 | -- | -- |
| 109.66 | 0.489 | 9.46 | 2.29 | -- | -- | -- | -- | 0.0707 | -- | -- | -- | -- | -- |
| 214.72 | 0.685 | 9.51 | -- | 0.805 | -- | -- | -- | -0.201 | 5.43 | -- | -- | -- | -- |
| 238.54 | 0.719 | 9.5 | -- | -- | 0.787 | -- | -- | -0.0953 | -- | 68.96 | 282 | -- | -- |
| 248.49 | 0.736 | 9.52 | -- | -- | -- | -- | -- | -0.184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 12 | 57.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 17 | 57.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 19 | 57.48 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 24 | 57.63 | temperature | 15 | 270 | > th | dose dependent | sin | 5 | NA |
| 31 | 57.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 46 | 58.19 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 48 | 58.21 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 49 | 58.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 53 | 58.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 55 | 58.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 80 | 58.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 95 | 58.76 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 98 | 58.78 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 99 | 58.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 124 | 58.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 140 | 59.06 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 146 | 59.08 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 147 | 59.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 151 | 59.16 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 158 | 59.21 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 164 | 59.23 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 170 | 59.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 245 | 59.73 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 254 | 59.78 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 263 | 59.83 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 268 | 59.85 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 287 | 59.91 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 291 | 59.92 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 296 | 59.94 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 302 | 59.95 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 306 | 59.95 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 310 | 59.96 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 326 | 60.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 327 | 60.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 386 | 60.16 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 510 | 60.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 544 | 60.54 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 614 | 60.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 643 | 60.76 | temperature | 15 | 10 | > th | dose dependent | sin | 1 | NA |
| 658 | 60.78 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 714 | 60.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 766 | 60.97 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 775 | 60.99 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 792 | 61.01 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 798 | 61.02 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 18 |
| 840 | 61.10 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 853 | 61.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 878 | 61.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 915 | 61.23 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 938 | 61.26 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 14 |
| 964 | 61.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |